HHsearch alignment for GI: 254780523 and conserved domain: PRK12718
>PRK12718 flgL flagellar hook-associated protein FlgL; Provisional.
Probab=100.00 E-value=0 Score=381.31 Aligned_cols=354 Identities=14% Similarity=0.091 Sum_probs=243.5
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r 4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL 83 (357)
Q Consensus 4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L 83 (357)
T Consensus 1 MRISt~~~~~~~~~~~~~~q~~l~~~q~qlssGkri~~psDDPvaa~~~~~l~~~~~~~~qy~~N~~~a~~~L~~~e~~L 80 (510)
T PRK12718 1 MRLSTALIYQNGLNGVLNQEAAMARLQEQLSSGRRVLTPADDPLAAALAVNVSQTSSMNSNYDANRKQAEQALGAQTNTL 80 (510)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 93536999999999999999999999999850786688210999999999999999999999999999999999899999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCEEECCCCCCCCCCCCC-CCC-CCCCCC
Q ss_conf 8899999999999985137888988999999999865677777765200-2430410566544321223-333-322222
Q gi|254780523|r 84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD-EGQYLFSGINSSEKPLNGY-FTK-DSLAKK 160 (357)
Q Consensus 84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~~-~g~~~f~G~~~~~~p~~~~-~~~-~~~~~~ 160 (357)
T Consensus 81 ~~v~~~l~~~~el~v~a~ngt~s~~dr~aia~El~~~~~~l~~laNs~d~~G~ylFaG~~~~t~Pf~~~~~~G~~~Y~Gd 160 (510)
T PRK12718 81 QSVVKNMQEMLKRVVEAGNGTMSDADRQALVIALKGAREELVGLANATDGNGQYLFSGYKGFTQPYSFDAATGKVTYNGD 160 (510)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCEECCCCCEEEEECC
T ss_conf 99999999999999985178889788999999999999999999646587887744673578998313489851898257
Q ss_pred CCCCHHHC------CCCCCCCCCCCC------------------CC---------CCCCCCCCCC---------------
Q ss_conf 22100010------134543222456------------------65---------3211233322---------------
Q gi|254780523|r 161 SFDQMLQG------FLEENSKSLLAG------------------QH---------LEVSSMNAQQ--------------- 192 (357)
Q Consensus 161 ~~~~~~~~------~~~~~~~~~~~~------------------~~---------~~~~~~~~~~--------------- 192 (357)
T Consensus 161 ~gq~~~qv~~~~~~~~~d~G~~vF~~v~~g~~~~~~~a~~~ntg~g~~s~vs~d~~~~~~~~g~~~~i~ft~~~~td~~~ 240 (510)
T PRK12718 161 LGQRGIQVDQSRLMSGGDVGSDIFNSVTSGTLAYIADAGAGNAGTGQYSAVSFDGPRAGNYVGRDFRIEFTRDAVTDELQ 240 (510)
T ss_pred CCCEEEEECCCEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCEEECCCCCCCCCC
T ss_conf 76246873576366347776123102467874432466655667774321002564444446765310102233455422
Q ss_pred --------------------------CCCC------CCC-----CCCCCCCCCCCCCEEE--------------------
Q ss_conf --------------------------1001------233-----4444456654320011--------------------
Q gi|254780523|r 193 --------------------------MTDF------IKQ-----LEDKFSDDEYWANNWS-------------------- 215 (357)
Q Consensus 193 --------------------------~~~~------~~~-----~~~~~~~~~~~~~~~~-------------------- 215 (357)
T Consensus 241 ~~v~~~~~~~~~~~~~~~n~~~~~g~~i~~~gv~~~l~g~~~~gd~~t~~~~~~~~~~~~~~~~~t~s~~~t~~s~~d~~ 320 (510)
T PRK12718 241 YSVLSDPPVVPPEQPLPANMPYSEGSVIDMNGVSIKLSGQPEAGDVFTVETPKSWKMGVQGDAANTGSATLTPVSLPDGL 320 (510)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 20014665555444444556666663011145213421466667511102566443344556677664433444566665
Q ss_pred ----------CCCCCCC---------------EEECCCCC-----CEEEEEECC------------CCHHHHHHHHHHHH
Q ss_conf ----------1566520---------------00002564-----102232035------------31011233333210
Q gi|254780523|r 216 ----------NASDHNI---------------KYRIKDTE-----GIDVSANVN------------MRGIRDIMFVAVIG 253 (357)
Q Consensus 216 ----------~~~~~~~---------------~~~~~~~~-----~~~~~~~~~------------~~~~~~~~~~~~~~ 253 (357)
T Consensus 321 ~~~~~~~~~~~~ga~g~~~~~t~~~~~~~~~~~~~~~~G~~i~~~Gv~~~i~G~Pa~GDsf~v~~~~~~~~~vf~Tl~~l 400 (510)
T PRK12718 321 TGKNLSVAFLDDGAGGLLYSVTSTPPDPSLPANVPVKPGDVIDIGGLKVKVDGQPAAGDTYAVTTPKSANVDVFDTLNDL 400 (510)
T ss_pred CCCCCCEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCCCCCEEEECCCCCCCCCHHHHHHHH
T ss_conf 56653112114776631320234677766555555577760453444897446768886233227875545599999999
Q ss_pred CCCC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 0233-----44555113566777778999999999999999866899999999998999999999864333278889999
Q gi|254780523|r 254 TEFL-----SKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAH 328 (357)
Q Consensus 254 ~~~~-----~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~~ 328 (357)
T Consensus 401 i~aL~tp~~~~~~~~~~~~~~l~~al~~ld~a~~~v~~~ra~vGaRlN~ld~~~~~~~~~~l~~~~~lS~leDlD~aeAi 480 (510)
T PRK12718 401 IGALDTPISGDPQAAAALANTLATANKKLNLSLDNVLTVQASVGARLNELEALGNTGAQKGLSYVKQLSDLEDVNIYQAT 480 (510)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 99984857798789999999999999989999999999999887888899999865476787999988750236899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHCC
Q ss_conf 99999999999999999997368505209
Q gi|254780523|r 329 AQLSTLINKIEMSYMITTKLQKLSILNYL 357 (357)
Q Consensus 329 t~l~~~q~~~qas~~~~a~i~~~SL~dyL 357 (357)
T Consensus 481 s~l~~qq~~LQAaQqsF~ki~~LSLFn~~ 509 (510)
T PRK12718 481 SDLLLRQVALQAASLALQRIQGNSLFSMG 509 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999999999999999998656511146