HHsearch alignment for GI: 254780523 and conserved domain: PRK12803
>PRK12803 flagellin; Provisional.
Probab=100.00 E-value=0 Score=309.06 Aligned_cols=325 Identities=10% Similarity=0.006 Sum_probs=222.3
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r 4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL 83 (357)
Q Consensus 4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L 83 (357)
T Consensus 1 ~~IntN~~a~~A~~~l~~~~~~l~~s~~rLSSG~RInsa~DDaAGlaIa~~l~sqi~~l~qa~rNa~daiS~lqtaegal 80 (335)
T PRK12803 1 MIINHNTSAINASRNNSINAANLSKTQEKLSSGHRINRASDDAAGMGVAGKINAQIRGLSQASRNTSKAINFIQTTEGNL 80 (335)
T ss_pred CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 96726799999999999999999999998510066477421588999999999999989999853988999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8899999999999985137888988999999999865677777765-200243041056654432122333332222222
Q gi|254780523|r 84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFAN-MTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF 162 (357)
Q Consensus 84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN-~~~~g~~~f~G~~~~~~p~~~~~~~~~~~~~~~ 162 (357)
T Consensus 81 ~ei~~iLqRmrELavqAaNgT~s~~dr~~i~~E~~qL~~eI~~Ia~~T~fNg~~ll~g~~~~~~~~~~~~~~~~~~~~~~ 160 (335)
T PRK12803 81 NEVEKVLVRMKELAVQSGNGTYSDADRGSIQIEIEQLTDEINRIADQAQYNQMHMLSNKSAAQNVRTAEELGMQPAKINT 160 (335)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC
T ss_conf 99999999999999985367899899999999999999999999984836886144676533231117650654223565
Q ss_pred CCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCCEEEEEECCCCH
Q ss_conf 10001013454322245665321123332210012334444456654320011156652000002564102232035310
Q gi|254780523|r 163 DQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRG 242 (357)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (357)
T Consensus 161 ~~~~~~~----------~~~~t~~~~~g~~~~~~~~~----~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 225 (335)
T PRK12803 161 PASLSGS----------QASWTLRVHVGANQDEAIAV----NIYAANVA-NLFSGEGAQQAAPVQEGAQQEGAQAAPAPA 225 (335)
T ss_pred CCCCCCC----------CCCEEEEEEECCCCCCEEEE----EEEECHHH-HHHCCCCCHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 2211355----------55236899863777633788----53200366-654145520111110011001100012200
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 11233333210023344555113566777778999999999999999866899999999998999999999864333278
Q gi|254780523|r 243 IRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGV 322 (357)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~da 322 (357)
T Consensus 226 -------~~~~-~~g~~~~~~i~t~~~A~~ai~~iD~Ai~~v~~~Ra~lGA~qNRLe~~~~nl~~~~~Nl~aa~SrI~Da 297 (335)
T PRK12803 226 -------AAPA-QGGVNSPVNVTTTVDANMSLAKIENAIRMISDQRANLGAFQNRLESIKASTEYAIENLKASYAQIKDA 297 (335)
T ss_pred -------CCCC-CCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf -------0001-35654543000086599999999999999999999870899999999989999999999975315630
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 88999999999999999999999997368
Q gi|254780523|r 323 EQHTAHAQLSTLINKIEMSYMITTKLQKL 351 (357)
Q Consensus 323 D~ae~~t~l~~~q~~~qas~~~~a~i~~~ 351 (357)
T Consensus 298 D~A~E~~~ltk~qil~Qa~~amLaQAN~~ 326 (335)
T PRK12803 298 TMTDEVVASTTNSILTQSAMAMIAQANQV 326 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 59999999999999999999999997617