HHsearch alignment for GI: 254780523 and conserved domain: PRK12804
>PRK12804 flagellin; Provisional.
Probab=100.00 E-value=0 Score=312.53 Aligned_cols=290 Identities=12% Similarity=0.038 Sum_probs=219.5
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r 4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL 83 (357)
Q Consensus 4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L 83 (357)
T Consensus 1 mrIt~n~~a~~al~~L~~~~~~l~~~q~rLSSGkrI~~asDDpa~~aia~~l~s~~~~~~~~~~N~~~a~s~l~tad~al 80 (307)
T PRK12804 1 MRINHNIAALNTLNRLSANNGASQKNMEKLSSGLKINRAGDDAAGLAISEKMRGQIRGLEMASKNAQDGISLIQTAEGAL 80 (307)
T ss_pred CEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 95624299999999999999999999998541176377421799999999999999999999998999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHH-------HCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 8899999999999985137-8889889999999998656777777652-------0024304105665443212233333
Q gi|254780523|r 84 SSMQKIVQDMVGPLVILLE-GKTDNNKFPINAGMLRDSYESFVTFANM-------TDEGQYLFSGINSSEKPLNGYFTKD 155 (357)
Q Consensus 84 ~~i~~~l~~~~~~~v~a~n-~t~~~~d~~~~a~e~~~~~~~l~~~aN~-------~~~g~~~f~G~~~~~~p~~~~~~~~ 155 (357)
T Consensus 81 ~~~~~il~R~rELavqaaN~Gt~s~~dr~ai~~Ei~~L~~qi~~~~n~~~i~~~t~f~G~~~~~g~~~~~~~~~~~~~~~ 160 (307)
T PRK12804 81 TETHSILQRVRELVVQAGNTGTQDGTDLGAIQEEIKALVDEIGNGTDKNGISDRTEFNGKKLLDGTFKPAAPAAGTKSLT 160 (307)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCEEECCCCCCCCCCCCCCCCEE
T ss_conf 99999999999999985367778888999999999999999974303340231042078761256654567677776169
Q ss_pred CCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCCEEEE
Q ss_conf 22222221000101345432224566532112333221001233444445665432001115665200000256410223
Q gi|254780523|r 156 SLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVS 235 (357)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (357)
T Consensus 161 ~~~g~~~~~~---------------------------~~v~~~~~~~~~~-----------------------~~~~~~~ 190 (307)
T PRK12804 161 FQIGANAAQQ---------------------------LSVNIEAMSADAL-----------------------GVKDADG 190 (307)
T ss_pred EEECCCCCCE---------------------------EEEEEEECCCHHH-----------------------CCCCCCC
T ss_conf 9854777643---------------------------7887542330231-----------------------3555554
Q ss_pred EECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 20353101123333321002334455511356677777899999999999999986689999999999899999999986
Q gi|254780523|r 236 ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTY 315 (357)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~ 315 (357)
T Consensus 191 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~id~al~~v~~~ra~lGA~~nrle~~~~~l~~~~~nl~~~ 262 (307)
T PRK12804 191 TLVTGKSVSDI--------DVTKFADIAADADGGFDDQLDIVDGAIKQVSDQRSKLGAVQNRLEHTINNLGASSENLTAA 262 (307)
T ss_pred CCCCCCCCCHH--------HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 21234210000--------2233200011001007889999999999999999886899999999998899999999998
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 433327888999999999999999999999997368
Q gi|254780523|r 316 ISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL 351 (357)
Q Consensus 316 ~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~ 351 (357)
T Consensus 263 ~s~i~DaD~A~e~~~l~~~qi~~Qaa~a~laqAN~~ 298 (307)
T PRK12804 263 ESRIRDVDMAKEMSEFTKNNILSQASQAMLAQANQQ 298 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 743560069999999999999999999999998266