HHsearch alignment for GI: 254780523 and conserved domain: PRK12807
>PRK12807 flagellin; Provisional.
Probab=100.00 E-value=0 Score=307.21 Aligned_cols=277 Identities=10% Similarity=0.051 Sum_probs=225.9
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r 4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL 83 (357)
Q Consensus 4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L 83 (357)
T Consensus 1 mrIntN~~a~~a~~~l~~~~~~l~~~~~rlSSG~rIn~asDD~ag~aia~~l~s~~~~~~~~~~N~~~a~s~l~tad~al 80 (287)
T PRK12807 1 MRINTNINSMRTQEYMRQNQDKMNVSMNRLSSGKRINSAADDAAGLAIATRMRARQSGLEKASQNTQDGMSLIRTAESAM 80 (287)
T ss_pred CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 95514299999999999999999999998600166478553799999999999999989999988998999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 889999999999998513788898899999999986567777776-5200243041056654432122333332222222
Q gi|254780523|r 84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFA-NMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF 162 (357)
Q Consensus 84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~a-N~~~~g~~~f~G~~~~~~p~~~~~~~~~~~~~~~ 162 (357)
T Consensus 81 ~~i~~il~RmrELavqa~n~t~s~~dR~ai~~E~~~L~~~i~~Ia~nt~fnG~~l~~g~~~~~~~~~~~~~~~~~~~~~~ 160 (287)
T PRK12807 81 NSVSNILTRMRDIAVQSSNGTNTAENQSALQKEFAELQEQIDYIAKNTEFNDKNLLAGTGAVTIGSTSISGAEISIETLD 160 (287)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCEEEEEECC
T ss_conf 99999999999999987447998888999999999999999999985738987402788765454435677526787412
Q ss_pred CCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCCEEEEEECCCCH
Q ss_conf 10001013454322245665321123332210012334444456654320011156652000002564102232035310
Q gi|254780523|r 163 DQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRG 242 (357)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (357)
T Consensus 161 ~~-------------------------~~~-----------------~~~~~~----------~~------------~~~ 176 (287)
T PRK12807 161 SS-------------------------ATN-----------------QQITIK----------LA------------NTT 176 (287)
T ss_pred CC-------------------------CCC-----------------CEEEEE----------EC------------CCC
T ss_conf 56-------------------------666-----------------337887----------41------------331
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 11233333210023344555113566777778999999999999999866899999999998999999999864333278
Q gi|254780523|r 243 IRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGV 322 (357)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~da 322 (357)
T Consensus 177 ~~~~----~~---~~~~~~~~~~~~~~a~~~l~~id~ai~~v~~~ra~lGA~~nrle~~~~~l~~~~~~l~~~~S~i~Da 249 (287)
T PRK12807 177 AEKL----GI---DATTSNISISGAASALAAISALNTALNTVAGNRATLGATLNRLDRNVENLNNQATNMASAASQIEDA 249 (287)
T ss_pred HHHH----CC---CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3442----32---3323433345477799999999999999999999989999999999989999999999998877710
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 88999999999999999999999997368
Q gi|254780523|r 323 EQHTAHAQLSTLINKIEMSYMITTKLQKL 351 (357)
Q Consensus 323 D~ae~~t~l~~~q~~~qas~~~~a~i~~~ 351 (357)
T Consensus 250 D~A~e~~~l~~~qil~Qaa~a~lsqAN~~ 278 (287)
T PRK12807 250 DMAKEMSEMTKFKILNEAGISMLSQANQT 278 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 49999999999999999999999998467