HHsearch alignment for GI: 254780523 and conserved domain: PRK12807

>PRK12807 flagellin; Provisional.
Probab=100.00  E-value=0  Score=307.21  Aligned_cols=277  Identities=10%  Similarity=0.051  Sum_probs=225.9

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r    4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL   83 (357)
Q Consensus         4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L   83 (357)
T Consensus         1 mrIntN~~a~~a~~~l~~~~~~l~~~~~rlSSG~rIn~asDD~ag~aia~~l~s~~~~~~~~~~N~~~a~s~l~tad~al   80 (287)
T PRK12807          1 MRINTNINSMRTQEYMRQNQDKMNVSMNRLSSGKRINSAADDAAGLAIATRMRARQSGLEKASQNTQDGMSLIRTAESAM   80 (287)
T ss_pred             CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             95514299999999999999999999998600166478553799999999999999989999988998999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             889999999999998513788898899999999986567777776-5200243041056654432122333332222222
Q gi|254780523|r   84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFA-NMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF  162 (357)
Q Consensus        84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~a-N~~~~g~~~f~G~~~~~~p~~~~~~~~~~~~~~~  162 (357)
T Consensus        81 ~~i~~il~RmrELavqa~n~t~s~~dR~ai~~E~~~L~~~i~~Ia~nt~fnG~~l~~g~~~~~~~~~~~~~~~~~~~~~~  160 (287)
T PRK12807         81 NSVSNILTRMRDIAVQSSNGTNTAENQSALQKEFAELQEQIDYIAKNTEFNDKNLLAGTGAVTIGSTSISGAEISIETLD  160 (287)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCEEEEEECC
T ss_conf             99999999999999987447998888999999999999999999985738987402788765454435677526787412


Q ss_pred             CCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCCEEEEEECCCCH
Q ss_conf             10001013454322245665321123332210012334444456654320011156652000002564102232035310
Q gi|254780523|r  163 DQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRG  242 (357)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (357)
T Consensus       161 ~~-------------------------~~~-----------------~~~~~~----------~~------------~~~  176 (287)
T PRK12807        161 SS-------------------------ATN-----------------QQITIK----------LA------------NTT  176 (287)
T ss_pred             CC-------------------------CCC-----------------CEEEEE----------EC------------CCC
T ss_conf             56-------------------------666-----------------337887----------41------------331


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             11233333210023344555113566777778999999999999999866899999999998999999999864333278
Q gi|254780523|r  243 IRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGV  322 (357)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~da  322 (357)
T Consensus       177 ~~~~----~~---~~~~~~~~~~~~~~a~~~l~~id~ai~~v~~~ra~lGA~~nrle~~~~~l~~~~~~l~~~~S~i~Da  249 (287)
T PRK12807        177 AEKL----GI---DATTSNISISGAASALAAISALNTALNTVAGNRATLGATLNRLDRNVENLNNQATNMASAASQIEDA  249 (287)
T ss_pred             HHHH----CC---CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             3442----32---3323433345477799999999999999999999989999999999989999999999998877710


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             88999999999999999999999997368
Q gi|254780523|r  323 EQHTAHAQLSTLINKIEMSYMITTKLQKL  351 (357)
Q Consensus       323 D~ae~~t~l~~~q~~~qas~~~~a~i~~~  351 (357)
T Consensus       250 D~A~e~~~l~~~qil~Qaa~a~lsqAN~~  278 (287)
T PRK12807        250 DMAKEMSEMTKFKILNEAGISMLSQANQT  278 (287)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             49999999999999999999999998467