HHsearch alignment for GI: 254780523 and conserved domain: PRK12808
>PRK12808 flagellin; Provisional.
Probab=100.00 E-value=0 Score=292.91 Aligned_cols=348 Identities=11% Similarity=0.063 Sum_probs=221.7
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r 4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL 83 (357)
Q Consensus 4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L 83 (357)
T Consensus 1 m~IntN~~Al~a~~~L~~~~~~l~~s~eRLSSG~RIN~A~DdAAGlaIs~rm~sqi~gl~qa~~Na~dgiS~~qtAEgal 80 (460)
T PRK12808 1 MRINTNINSMRTQEYMRQNQAKMSNAMDRLSSGKRINNASDDAAGLAIATRMRARESGLGVAANNTQDGMSLIRTADSAM 80 (460)
T ss_pred CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 96644699999999999999999999998501165266410288999999999999889999998998999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCEEECCCCCCCCCCCCCCCCCC--CCCC
Q ss_conf 889999999999998513788898899999999986567777776520-0243041056654432122333332--2222
Q gi|254780523|r 84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT-DEGQYLFSGINSSEKPLNGYFTKDS--LAKK 160 (357)
Q Consensus 84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~-~~g~~~f~G~~~~~~p~~~~~~~~~--~~~~ 160 (357)
T Consensus 81 ~ev~~iLqRmReLAVQAANgTns~~DR~aiQ~Ei~qL~~EIdrIa~~T~fNg~~LLdGs~~~~~~~~~~~~~~~~~i~i~ 160 (460)
T PRK12808 81 NSVSNILLRMRDLANQSANGTNTDKNQAALQKEFAELQKQIDYIADNTQFNDKNLLDGSNSSIAIQTLDSSDGGKQIGID 160 (460)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEECCCCCCCEEEEE
T ss_conf 99999999999999986156688788999999999999999999873856887600577875026741267876068641
Q ss_pred CCCCHHHC------CCCCCCCCC-------------------------CCCCCCCCCCCCCCCCCCCCCCCCC-------
Q ss_conf 22100010------134543222-------------------------4566532112333221001233444-------
Q gi|254780523|r 161 SFDQMLQG------FLEENSKSL-------------------------LAGQHLEVSSMNAQQMTDFIKQLED------- 202 (357)
Q Consensus 161 ~~~~~~~~------~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~------- 202 (357)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (460)
T PRK12808 161 LKSASLEALGINNLSIGANGNGLAKATELAGVADDTAANASAAAAKKIDDTTGDTDVKRDAAKVKAYTKQYKALKAALDA 240 (460)
T ss_pred CCCCCHHHCCCCCCEECCCCCCCCCEEEEECCCCCCCCCCCHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 23232010255530001323333311242020132113331112010133334320023332110000011210000244
Q ss_pred ----------CCCCCCCCCCE-------EECCCCC---------CCEEECC------CCCC---------EEEEEECCCC
Q ss_conf ----------44566543200-------1115665---------2000002------5641---------0223203531
Q gi|254780523|r 203 ----------KFSDDEYWANN-------WSNASDH---------NIKYRIK------DTEG---------IDVSANVNMR 241 (357)
Q Consensus 203 ----------~~~~~~~~~~~-------~~~~~~~---------~~~~~~~------~~~~---------~~~~~~~~~~ 241 (357)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (460)
T PRK12808 241 KDTGLIDDAKKLVDGANTLLNAQAIKKAEETAAKATLTTDITAATLVDKYSDAKSDATTDTRAKAYLDAKAAYDKVKGSM 320 (460)
T ss_pred CCCCCCCCCHHCCCCCCEEEECCCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHEECCCCCCC
T ss_conf 11111232011013321021022332100000112224444210110022234443445430000000000000235654
Q ss_pred ----------H---------HHHHHHHHHHHCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ----------0---------112333332100233--4455511356677777899999999999999986689999999
Q gi|254780523|r 242 ----------G---------IRDIMFVAVIGTEFL--SKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300 (357)
Q Consensus 242 ----------~---------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~ 300 (357)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~t~~~A~~Ai~~ID~AI~~v~~~Ra~lGA~qNRLe~ 400 (460)
T PRK12808 321 NSKDVTKLSAAIDRFSKDDASGDAAEVLVAKGDAAKAATTNGTTSTATDSLSAVKAIDEALKTIADNRATLGATLNRLDF 400 (460)
T ss_pred CCCCCEEECCHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 43211011010101012455521455566521210012245442115559999999999999999999988189999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999899999999986433327888999999999999999999999997368
Q gi|254780523|r 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL 351 (357)
Q Consensus 301 ~~~~l~~~~~~l~~~~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~ 351 (357)
T Consensus 401 ~i~nL~~~~eN~~aa~SrI~DaDmA~E~a~ltk~qILqQAgtamLAQANq~ 451 (460)
T PRK12808 401 NVNNLKSQSSSMASAASQIEDADMAKEMSEMTKFKILNEAGISMLSQANQT 451 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999999997667660659999999999999999999999996517