HHsearch alignment for GI: 254780523 and conserved domain: PRK13588

>PRK13588 flagellin B; Provisional.
Probab=100.00  E-value=0  Score=286.93  Aligned_cols=345  Identities=12%  Similarity=0.054  Sum_probs=221.8

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r    4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL   83 (357)
Q Consensus         4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L   83 (357)
T Consensus         3 ~~IntNi~Al~a~~~L~~~~~~l~~slerLSSG~RIN~A~DDAAGlaIs~rmrsQi~gl~qA~rNa~dgiSliQTAEGAL   82 (514)
T PRK13588          3 FRINTNIAALNAHANGVQNNRDLSSSLEKLSSGLRINKAADDASGMAIADSLRSQAANLGQAIRNANDAIGIVQTADKAM   82 (514)
T ss_pred             CEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             47956899999999999999999999997521065356430377899999999999889999986888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCEEECCCCCCCCCCCCCCCCCCCC----
Q ss_conf             889999999999998513788898899999999986567777776520-024304105665443212233333222----
Q gi|254780523|r   84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT-DEGQYLFSGINSSEKPLNGYFTKDSLA----  158 (357)
Q Consensus        84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~-~~g~~~f~G~~~~~~p~~~~~~~~~~~----  158 (357)
T Consensus        83 ~Ev~~iLqRmRELAVQAAN~t~s~~dR~alQ~Ei~qL~~EIdrIa~~T~FNg~~LLdGs~~~~~~qvGa~~~~ti~~~~~  162 (514)
T PRK13588         83 DEQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLEELDNIANTTSFNGQQMLSGSFSNKEFQIGAYSNTTVKASIG  162 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEECCEECCCCCCCCCEEEECCCCCCEEEEEEC
T ss_conf             99999999999999987037898889999999999999999877652623888503677777128853788854788504


Q ss_pred             -------C-CCCC-------------CHHHC------CCCCCCCCC--------C--CCC----------------CCCC
Q ss_conf             -------2-2221-------------00010------134543222--------4--566----------------5321
Q gi|254780523|r  159 -------K-KSFD-------------QMLQG------FLEENSKSL--------L--AGQ----------------HLEV  185 (357)
Q Consensus       159 -------~-~~~~-------------~~~~~------~~~~~~~~~--------~--~~~----------------~~~~  185 (357)
T Consensus       163 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  242 (514)
T PRK13588        163 ATSSDKIGHVRFETSSFSGEGMLASAAAQNLTEVGLKFKQVDGVNDYKIETVRISTSAGTGIGALAEIINKFSDTLGVRA  242 (514)
T ss_pred             CCCCCCCCCEEEEECCCCCCCCEEEECCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCCHHHHHHHHCCCCCCCCEEE
T ss_conf             54355434302320243333320000034555410244202454431023457630146406778765304455443047


Q ss_pred             -CCC--------CCCCCCCC----------------------CCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCCEEE
Q ss_conf             -123--------33221001----------------------23344444566543200111566520000025641022
Q gi|254780523|r  186 -SSM--------NAQQMTDF----------------------IKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDV  234 (357)
Q Consensus       186 -~~~--------~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (357)
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-tg-~~~~~~~~g~~~~~~~~g~~i~~  319 (514)
T PRK13588        243 SYNVMATGGTPIQSGTVRELTINGVEIGTVNDVHKNDADGRLINAINS-VKDR-TG-VEASLDIQGRINLTSRDGRAISV  319 (514)
T ss_pred             EEEEEECCCCCCCCCCCEEEEECCEEECCCEEEECCCCCCHHHHHHHC-CCCC-CC-EEEEEECCCCEEEEECCCCEEEE
T ss_conf             899863145322344301355414010221010024654025554303-2344-44-26896046607887237723898


Q ss_pred             E-----------------------------EECCCC-------------HHHHHHH---------------------HHH
Q ss_conf             3-----------------------------203531-------------0112333---------------------332
Q gi|254780523|r  235 S-----------------------------ANVNMR-------------GIRDIMF---------------------VAV  251 (357)
Q Consensus       235 ~-----------------------------~~~~~~-------------~~~~~~~---------------------~~~  251 (357)
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  399 (514)
T PRK13588        320 HGASASGQVFGGGNFAGISGTQHAFVGRLTLTRTDARDIIVSGVNFSHVGFHSAQGVAEYTVNLRAVRGIIDANVASAAG  399 (514)
T ss_pred             ECCCCCCCCCCCCCEECCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHCCC
T ss_conf             40455550003441010245532000211355204420354123333333101345530023201224410242000134


Q ss_pred             HHCC------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf             1002------3344555113566777778999999999999999866899999999998999999999864333278889
Q gi|254780523|r  252 IGTE------FLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQH  325 (357)
Q Consensus       252 ~~~~------~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~a  325 (357)
T Consensus       400 ~~~~~~~~~~~~~~~~~~v~t~~~A~~ai~~iD~Ai~~Vs~~Ra~LGA~QNRLe~ti~nL~~~~eNl~aA~SrI~DaDmA  479 (514)
T PRK13588        400 ANANGAQAETNSQGIGAGVTSLKGAMIVMDMAESARKQLDKIRSDLGSVQNQLVSTINNISVTQVNVKAAESQIRDVDFA  479 (514)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             20124322121333355653277799999999999999999998772999999999998999999999998889852199


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999999999999997368
Q gi|254780523|r  326 TAHAQLSTLINKIEMSYMITTKLQKL  351 (357)
Q Consensus       326 e~~t~l~~~q~~~qas~~~~a~i~~~  351 (357)
T Consensus       480 ~Ema~lTk~qIL~QAg~amLAQANq~  505 (514)
T PRK13588        480 EESANFSKYNILAQSGSFAMAQANAV  505 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999999999999999998256