HHsearch alignment for GI: 254780523 and conserved domain: PRK13588
>PRK13588 flagellin B; Provisional.
Probab=100.00 E-value=0 Score=286.93 Aligned_cols=345 Identities=12% Similarity=0.054 Sum_probs=221.8
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r 4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL 83 (357)
Q Consensus 4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L 83 (357)
T Consensus 3 ~~IntNi~Al~a~~~L~~~~~~l~~slerLSSG~RIN~A~DDAAGlaIs~rmrsQi~gl~qA~rNa~dgiSliQTAEGAL 82 (514)
T PRK13588 3 FRINTNIAALNAHANGVQNNRDLSSSLEKLSSGLRINKAADDASGMAIADSLRSQAANLGQAIRNANDAIGIVQTADKAM 82 (514)
T ss_pred CEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 47956899999999999999999999997521065356430377899999999999889999986888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCEEECCCCCCCCCCCCCCCCCCCC----
Q ss_conf 889999999999998513788898899999999986567777776520-024304105665443212233333222----
Q gi|254780523|r 84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT-DEGQYLFSGINSSEKPLNGYFTKDSLA---- 158 (357)
Q Consensus 84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~-~~g~~~f~G~~~~~~p~~~~~~~~~~~---- 158 (357)
T Consensus 83 ~Ev~~iLqRmRELAVQAAN~t~s~~dR~alQ~Ei~qL~~EIdrIa~~T~FNg~~LLdGs~~~~~~qvGa~~~~ti~~~~~ 162 (514)
T PRK13588 83 DEQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLEELDNIANTTSFNGQQMLSGSFSNKEFQIGAYSNTTVKASIG 162 (514)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEECCEECCCCCCCCCEEEECCCCCCEEEEEEC
T ss_conf 99999999999999987037898889999999999999999877652623888503677777128853788854788504
Q ss_pred -------C-CCCC-------------CHHHC------CCCCCCCCC--------C--CCC----------------CCCC
Q ss_conf -------2-2221-------------00010------134543222--------4--566----------------5321
Q gi|254780523|r 159 -------K-KSFD-------------QMLQG------FLEENSKSL--------L--AGQ----------------HLEV 185 (357)
Q Consensus 159 -------~-~~~~-------------~~~~~------~~~~~~~~~--------~--~~~----------------~~~~ 185 (357)
T Consensus 163 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 242 (514)
T PRK13588 163 ATSSDKIGHVRFETSSFSGEGMLASAAAQNLTEVGLKFKQVDGVNDYKIETVRISTSAGTGIGALAEIINKFSDTLGVRA 242 (514)
T ss_pred CCCCCCCCCEEEEECCCCCCCCEEEECCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCCHHHHHHHHCCCCCCCCEEE
T ss_conf 54355434302320243333320000034555410244202454431023457630146406778765304455443047
Q ss_pred -CCC--------CCCCCCCC----------------------CCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCCEEE
Q ss_conf -123--------33221001----------------------23344444566543200111566520000025641022
Q gi|254780523|r 186 -SSM--------NAQQMTDF----------------------IKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDV 234 (357)
Q Consensus 186 -~~~--------~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (357)
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-tg-~~~~~~~~g~~~~~~~~g~~i~~ 319 (514)
T PRK13588 243 SYNVMATGGTPIQSGTVRELTINGVEIGTVNDVHKNDADGRLINAINS-VKDR-TG-VEASLDIQGRINLTSRDGRAISV 319 (514)
T ss_pred EEEEEECCCCCCCCCCCEEEEECCEEECCCEEEECCCCCCHHHHHHHC-CCCC-CC-EEEEEECCCCEEEEECCCCEEEE
T ss_conf 899863145322344301355414010221010024654025554303-2344-44-26896046607887237723898
Q ss_pred E-----------------------------EECCCC-------------HHHHHHH---------------------HHH
Q ss_conf 3-----------------------------203531-------------0112333---------------------332
Q gi|254780523|r 235 S-----------------------------ANVNMR-------------GIRDIMF---------------------VAV 251 (357)
Q Consensus 235 ~-----------------------------~~~~~~-------------~~~~~~~---------------------~~~ 251 (357)
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 399 (514)
T PRK13588 320 HGASASGQVFGGGNFAGISGTQHAFVGRLTLTRTDARDIIVSGVNFSHVGFHSAQGVAEYTVNLRAVRGIIDANVASAAG 399 (514)
T ss_pred ECCCCCCCCCCCCCEECCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHCCC
T ss_conf 40455550003441010245532000211355204420354123333333101345530023201224410242000134
Q ss_pred HHCC------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 1002------3344555113566777778999999999999999866899999999998999999999864333278889
Q gi|254780523|r 252 IGTE------FLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQH 325 (357)
Q Consensus 252 ~~~~------~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~a 325 (357)
T Consensus 400 ~~~~~~~~~~~~~~~~~~v~t~~~A~~ai~~iD~Ai~~Vs~~Ra~LGA~QNRLe~ti~nL~~~~eNl~aA~SrI~DaDmA 479 (514)
T PRK13588 400 ANANGAQAETNSQGIGAGVTSLKGAMIVMDMAESARKQLDKIRSDLGSVQNQLVSTINNISVTQVNVKAAESQIRDVDFA 479 (514)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 20124322121333355653277799999999999999999998772999999999998999999999998889852199
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999999999997368
Q gi|254780523|r 326 TAHAQLSTLINKIEMSYMITTKLQKL 351 (357)
Q Consensus 326 e~~t~l~~~q~~~qas~~~~a~i~~~ 351 (357)
T Consensus 480 ~Ema~lTk~qIL~QAg~amLAQANq~ 505 (514)
T PRK13588 480 EESANFSKYNILAQSGSFAMAQANAV 505 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999998256