HHsearch alignment for GI: 254780523 and conserved domain: TIGR02550
>TIGR02550 flagell_flgL flagellar hook-associated protein 3; InterPro: IPR013384 FlgL (or HAP3) proteins are flagellar hook-associated proteins encoded in bacterial flagellar operons. An N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved in this family, though members show considerable length heterogeneity between these two well-conserved terminal regions - proteins in this family range from 287 to more than 500 residues in length. ; GO: 0001539 ciliary or flagellar motility, 0009424 flagellin-based flagellum hook.
Probab=100.00 E-value=4e-43 Score=257.23 Aligned_cols=349 Identities=14% Similarity=0.121 Sum_probs=249.0
Q ss_pred EECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 32189999999999999999999999997202204642128999999999999999999999999999999999999888
Q gi|254780523|r 5 GISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLS 84 (357)
Q Consensus 5 ~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L~ 84 (357)
T Consensus 1 r~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~g~~~~~~sddp~~~~~~~~~~~~~~~~~q~~~n~~~~~~~l~~~~~~l~ 80 (393)
T TIGR02550 1 RVSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALS 80 (393)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 96513567777777777777888877776420110244222578888887777777766666667777766665544444
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCEEECCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf 89999999999998513788898899999999986567777776520-0243041056654432122333332-222222
Q gi|254780523|r 85 SMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT-DEGQYLFSGINSSEKPLNGYFTKDS-LAKKSF 162 (357)
Q Consensus 85 ~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~-~~g~~~f~G~~~~~~p~~~~~~~~~-~~~~~~ 162 (357)
T Consensus 81 ~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~l~~~an~~d~~g~y~f~g~~~~~~pf~~~~~~~~~~~~g~~ 160 (393)
T TIGR02550 81 SVGDLLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLLSLANTKDGNGRYIFSGTKTDTPPFSEDGGGSGVTYAGDG 160 (393)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 45677888888887642255787789999999999998777641011357632204655565553214665431003653
Q ss_pred CCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------C-------------------CCCCCCC----C
Q ss_conf 1000101345432224566532112333221001233444--------4-------------------4566543----2
Q gi|254780523|r 163 DQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLED--------K-------------------FSDDEYW----A 211 (357)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-------------------~~~~~~~----~ 211 (357)
T Consensus 161 -~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (393)
T TIGR02550 161 -QRIVQVASSRSMPIGLPGDKVFMSIPN-DG-YVVNAAASQTDLLAAILVDTIGRYTFVDPLEAGLELLGVLANDAVSAT 237 (393)
T ss_pred -CCCEEEECCCCCCCCCCCCHHCCCCCC-CC-CCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCC
T ss_conf -000123023410134442001012443-32-211000112110000001101121111122220011000010100000
Q ss_pred CEEECCCCCCCEEECCCCCCEEE---------EEECCCCHHHHHHHHHHHHCCCCCCC-CCC-HHHHHHHHHHHHHHHHH
Q ss_conf 00111566520000025641022---------32035310112333332100233445-551-13566777778999999
Q gi|254780523|r 212 NNWSNASDHNIKYRIKDTEGIDV---------SANVNMRGIRDIMFVAVIGTEFLSKN-LTD-GARNVLTKKMLSTVQQG 280 (357)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~l~~a 280 (357)
T Consensus 238 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (393)
T TIGR02550 238 DIITESLEIGTTG-IKIKLNDELSSVLTGLAPPGNLEKSVFSTGDDLFAALKSLEDALSSGDQAAILAALSASLNELDKA 316 (393)
T ss_pred CCHHHHHHCCCCC-CCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 0000000002121-123332100010001221001101210025789999887654202320356677777887667767
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
Q ss_conf 99999999986689999999999899999999986433327888999999999999999999999997368505209
Q gi|254780523|r 281 LSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357 (357)
Q Consensus 281 ~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~SL~dyL 357 (357)
T Consensus 317 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~d~~~~i~~~~~~~~~~~a~~~~~~~~~~~sl~~~~ 393 (393)
T TIGR02550 317 LDNVLSARAEVGARLNRLELLESRLSEQKLVLTEVLSDLEDVDLAEAISDLTMQQSALQAALKAFAKIQQLSLFDYL 393 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 76666655554335666666665434445566666555441026788888888899999999876665200222039