HHsearch alignment for GI: 254780523 and conserved domain: pfam00700
>pfam00700 Flagellin_C Bacterial flagellin C-terminal helical region. Flagellins polymerize to form bacterial flagella. There is some similarity between this family and pfam00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate and this is shown to be correct as structurally this family forms an extended helix that interacts with pfam00700.
Probab=99.81 E-value=2.1e-19 Score=125.24 Aligned_cols=84 Identities=23% Similarity=0.402 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 89999999999999998668999999999989999999998643332788899999999999999999999999736850
Q gi|254780523|r 274 LSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353 (357)
Q Consensus 274 ~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~SL 353 (357)
T Consensus 1 i~~id~Ai~~v~~~ra~lGa~qnRl~~~~~~l~~~~~n~~~a~s~i~D~D~Aee~t~l~~~qil~qas~a~~aqanqlsl 80 (84)
T pfam00700 1 IDILDEAITQLTSQRSDLGAVQNRLESANTNLKNQSDNLKAAISRIEDVDPAEASTRVTKLQILLQASYALTAQANQLSL 80 (84)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 91889999999999998859999999999889999999999998866650999999999999999999999999867888
Q ss_pred HHCC
Q ss_conf 5209
Q gi|254780523|r 354 LNYL 357 (357)
Q Consensus 354 ~dyL 357 (357)
T Consensus 81 ln~L 84 (84)
T pfam00700 81 LNLL 84 (84)
T ss_pred HHHC
T ss_conf 8649