HHsearch alignment of GI: 254780523 and MMDB domain: 1ucu_A_1-40_455-494

>1ucu_A (A:1-40,A:455-494) Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium}
Probab=96.83  E-value=0.0033  Score=34.86  Aligned_cols=42  Identities=12%  Similarity=-0.075  Sum_probs=34.1

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHC
Q ss_conf             132189999999999999999999999997202204642128
Q gi|254780523|r    4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQL   45 (357)
Q Consensus         4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sdd   45 (357)
                      ++|.|+...-...+++...+..+.+..++||||.||+++--|
T Consensus         2 m~In~Ni~alna~r~l~~~~~~l~~sm~rLSSG~RINsADaD   43 (80)
T 1ucu_A            2 QVINTNSLSLLTQNNLNKSQSALGTAIERLSSGLRINSADSD   43 (80)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSCCC
T ss_pred             EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHCH
T ss_conf             199740999999999999999999999986114864782131