HHsearch alignment of GI: 254780523 and MMDB domain: 1ucu_A_1-40_455-494
>1ucu_A (A:1-40,A:455-494) Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium}
Probab=96.83 E-value=0.0033 Score=34.86 Aligned_cols=42 Identities=12% Similarity=-0.075 Sum_probs=34.1
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHC
Q ss_conf 132189999999999999999999999997202204642128
Q gi|254780523|r 4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQL 45 (357)
Q Consensus 4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sdd 45 (357)
++|.|+...-...+++...+..+.+..++||||.||+++--|
T Consensus 2 m~In~Ni~alna~r~l~~~~~~l~~sm~rLSSG~RINsADaD 43 (80)
T 1ucu_A 2 QVINTNSLSLLTQNNLNKSQSALGTAIERLSSGLRINSADSD 43 (80)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSCCC
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHCH
T ss_conf 199740999999999999999999999986114864782131