HHsearch alignment of GI: 254780523 and MMDB domain: 1ucu_A_1-40_455-494
>1ucu_A (A:1-40,A:455-494) Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium}
Probab=96.10 E-value=0.018 Score=30.71 Aligned_cols=55 Identities=11% Similarity=0.097 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999989999999998643-3327888999999999999999999999997368
Q gi|254780523|r 297 NINEERVFLQNKNNIIDTYIS-KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL 351 (357)
Q Consensus 297 ~l~~~~~~l~~~~~~l~~~~s-~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~ 351 (357)
.+......+....+.+.+++- +--|+|+|+++++|.+.++..|++..+.++..++
T Consensus 16 ~l~~~~~~l~~sm~rLSSG~RINsADaD~A~E~~~~tk~qIL~Qa~~amLaQAN~~ 71 (80)
T 1ucu_A 16 NLNKSQSALGTAIERLSSGLRINSADSDYATEVSNMSRAQILQQAGTSVLAQANQV 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCTTTSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999861148647821319999999999999999999999997416