HHsearch alignment of GI: 254780523 and MMDB domain: 2d4x_A_
>2d4x_A (A:) Flagellar HOOK-associated protein 3; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 1.90A {Salmonella typhimurium}
Probab=100.00 E-value=7.7e-34 Score=205.20 Aligned_cols=247 Identities=14% Similarity=0.105 Sum_probs=174.5
Q ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 21289999999999999999999999999999999999998888999999999999851378889889999999998656
Q gi|254780523|r 42 GLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121 (357)
Q Consensus 42 ~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~ 121 (357)
-||||+++.++++|+.+++++++|.+|+..+.+||+++|++|.++.++|+|+|+++++++||++++++|.+++.|+.+++
T Consensus 1 ~SDDp~~~~~a~~l~~~~~~~~q~~~Ni~~a~~~l~~ae~aL~~i~~~l~~~k~l~vqa~ngt~s~~dr~~i~~ei~~l~ 80 (248)
T 2d4x_A 1 MSDDPIAASQAVVLSQAQAQNSQYALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTLSDDDRASLATDLQGIR 80 (248)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99688999999999999999999999999999999999999999999999999999975147765222899988999988
Q ss_pred HHHHHHHHH-HCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 777777652-0024304105665443212233333222222210001013454322245665321123332210012334
Q gi|254780523|r 122 ESFVTFANM-TDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQL 200 (357)
Q Consensus 122 ~~l~~~aN~-~~~g~~~f~G~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (357)
+++.+++|+ +++|.|+|+|.....+||................................. .......
T Consensus 81 ~~i~~~an~t~~~g~~lf~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ 148 (248)
T 2d4x_A 81 DQLMNLANSTDGNGRYIFAGYKTEAAPFDQATGGYHGGEKSVTQQVDSARTMVIGHTGAQI------------FNSITSN 148 (248)
T ss_dssp HHHHHHHTCBCTTSCBTTSTTCTTSCSBCTTTCCBCSCSSCEEEECSSSCEEEESCCHHHH------------HSCCCTT
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH------------HCCCCCC
T ss_conf 9999998621024531125755466530046754435332111123544322224332011------------0133312
Q ss_pred CCCCCCCCCCCCEEECCCCCCCEEECCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 44445665432001115665200000256410223203531011233333210023344555113566777778999999
Q gi|254780523|r 201 EDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQG 280 (357)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 280 (357)
..............................................+..++.+
T Consensus 149 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 201 (248)
T 2d4x_A 149 ---------------------------AVPEPDGSDSEKNLFVMLDTAIAALKTPVEGNNVEKEKAAAAIDKTNRGLKNS 201 (248)
T ss_dssp ---------------------------CCCCTTSCCCCCCHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------CCCCCCCCCCCHHHHHHHHCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf ---------------------------22222322100023444200000100000000001110001112234678999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 99999999986689999999999899999999986433327888999
Q gi|254780523|r 281 LSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTA 327 (357)
Q Consensus 281 ~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~ 327 (357)
++.+...++.+|++++|++...+.+.....++++.+++++|+|++++
T Consensus 202 ~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~s~i~d~D~a~v 248 (248)
T 2d4x_A 202 LNNVLTVRAELGTQLSELSTLDSLGSDRALGQKLQMSNLVDVDWNSV 248 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999998299999999999899999999999888763283259