HHsearch alignment of GI: 254780523 and MMDB domain: 2d4y_A_1-268_356-463
>2d4y_A (A:1-268,A:356-463) HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=91.99 E-value=0.55 Score=22.49 Aligned_cols=93 Identities=8% Similarity=-0.084 Sum_probs=59.6
Q ss_pred CCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCHHHHHHHHH
Q ss_conf 4642128999999999999999999999999999999-99999988889999999999998513--78889889999999
Q gi|254780523|r 39 SDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKR-LSTSQAHLSSMQKIVQDMVGPLVILL--EGKTDNNKFPINAG 115 (357)
Q Consensus 39 i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~-l~~~e~~L~~i~~~l~~~~~~~v~a~--n~t~~~~d~~~~a~ 115 (357)
...|.+.+.....+.+.+.-..++.+....+...... -......+.+|+.++.++-++=.+-. .+.....+...+..
T Consensus 57 s~~P~~~~~R~~vl~~a~~L~~~~n~~~~~L~~l~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~~~~~~~~g~~~ndLlD 136 (376)
T 2d4y_A 57 VSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISRMTGVGAGASPNDLLD 136 (376)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 86879889999999999999999999999999999999999999999999999999999999999861468999067789
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9986567777776520
Q gi|254780523|r 116 MLRDSYESFVTFANMT 131 (357)
Q Consensus 116 e~~~~~~~l~~~aN~~ 131 (357)
+-.+++++|-.+..-+
T Consensus 137 qRD~ll~eLS~~i~i~ 152 (376)
T 2d4y_A 137 QRDQLVSELNKIVGVE 152 (376)
T ss_dssp HHHHHHHHHHHHSCEE
T ss_pred HHHHHHHHHHHHCCCE
T ss_conf 9999999987660704