RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780523|ref|YP_003064936.1| flagellar hook-associated
protein FlgL [Candidatus Liberibacter asiaticus str. psy62]
(357 letters)
>gnl|CDD|31535 COG1344, FlgL, Flagellin and related hook-associated proteins [Cell
motility and secretion].
Length = 360
Score = 57.0 bits (137), Expect = 7e-09
Identities = 61/360 (16%), Positives = 118/360 (32%), Gaps = 13/360 (3%)
Query: 6 ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
I+T+ + + K E + +G + A + L + +++
Sbjct: 3 INTNMAALNALRNLNKNQSELAKSQERLSSGLRINSASDDAAGLAIALRLRSQIRGLSQA 62
Query: 66 LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
+ +L T++ LS + KI+Q + V G + + +
Sbjct: 63 KDNAQDGISKLQTAEGALSEISKILQRIKELAVQAANGTLSDADRAAIQKEIEQLLDELD 122
Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
AN T G+YLF+G + +KP + K SF+ G L +
Sbjct: 123 NIANTTSFNGEYLFAGSKT-DKPFDFQNAGGETIKGSFNSDSSGT----VSVGLDITNTG 177
Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNI----KYRIKDTEGIDVSANVNM 240
S + T + ++ + A+ + K T + ANV
Sbjct: 178 DLSFTSLGTTAKDEPIDAGDVTAGPTNLFGAGANAADGASLGKALDAATTNTQIGANVGQ 237
Query: 241 R---GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKN 297
I D + L+ + A + L T+ L I RA LG +
Sbjct: 238 TTTLNINDGNVMTASAAGALADPGSSVATADGAQAALGTIDSALDNITSARAELGAVQNR 297
Query: 298 INEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
+ L N+++ + S+ + V+ +L+ L + S + +LS+L
Sbjct: 298 LESAINNLSNQSDNLTAAESRIVDVDMAEESTELTKLQILQQASLQALAQANQLSLLVLS 357
>gnl|CDD|144340 pfam00700, Flagellin_C, Bacterial flagellin C-terminal helical
region. Flagellins polymerize to form bacterial
flagella. There is some similarity between this family
and pfam00669, particularly the motif NRFXSXIXXL. It has
been suggested that these two regions associate and this
is shown to be correct as structurally this family forms
an extended helix that interacts with pfam00700.
Length = 84
Score = 49.1 bits (118), Expect = 2e-06
Identities = 19/84 (22%), Positives = 44/84 (52%)
Query: 274 LSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLST 333
+ + + ++ + QR+ LG + + L+N+++ + IS+ V+ A +++
Sbjct: 1 IDILDEAITQLTSQRSDLGAVQNRLESANTNLKNQSDNLKAAISRIEDVDPAEASTRVTK 60
Query: 334 LINKIEMSYMITTKLQKLSILNYL 357
L ++ SY +T + +LS+LN L
Sbjct: 61 LQILLQASYALTAQANQLSLLNLL 84
>gnl|CDD|144315 pfam00669, Flagellin_N, Bacterial flagellin N-terminal helical
region. Flagellins polymerize to form bacterial
flagella. This family includes flagellins and hook
associated protein 3. Structurally this family forms an
extended helix that interacts with pfam00700.
Length = 139
Score = 43.1 bits (102), Expect = 1e-04
Identities = 33/143 (23%), Positives = 57/143 (39%), Gaps = 9/143 (6%)
Query: 6 ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
IST+++ + K EE+ TG D L LGA + + +++
Sbjct: 1 ISTNALALAARRTLNRNQAELQKAQEELSTGLRIDSALDLGAGTAISVSLRSQIRGLSQA 60
Query: 66 LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
+ +N+L RL T+Q LS + I+Q + L + I+ + +
Sbjct: 61 VRNNNLGISRLQTAQGALSEVTDILQRLRE----LAVQAANGGNSDIDRASAQAEIQQLT 116
Query: 126 TFANMTDE-----GQYLFSGINS 143
+ N G+YLFSG N+
Sbjct: 117 SELNNIANTTSFNGEYLFSGTNT 139
>gnl|CDD|30672 COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase
[Translation, ribosomal structure and biogenesis].
Length = 308
Score = 29.1 bits (65), Expect = 2.1
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 159 KKSFDQML-QGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEY 209
+ D ML QG +EE G HL++ +M A + + L+ S +E
Sbjct: 208 NRRVDAMLEQGLIEEVKALYARGLHLDLPAMQAIGYKEILAYLDGGISLEEA 259
>gnl|CDD|73064 cd02658, Peptidase_C19B, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome..
Length = 311
Score = 28.7 bits (64), Expect = 2.4
Identities = 17/63 (26%), Positives = 28/63 (44%)
Query: 148 LNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDD 207
L+G ++K + K D G K+L+ H E S+M Q +F+ L DK +
Sbjct: 58 LSGRYSKPASLKSENDPYQVGIKPSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRE 117
Query: 208 EYW 210
+
Sbjct: 118 SFK 120
>gnl|CDD|36641 KOG1428, KOG1428, KOG1428, Inhibitor of type V adenylyl
cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1
[Signal transduction mechanisms].
Length = 3738
Score = 28.2 bits (62), Expect = 3.3
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 11/101 (10%)
Query: 142 NSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDF----- 196
N ++ L + ++ + +DQ EN+ SL ++VS A D
Sbjct: 1435 NCEKETLASLTSFPNILRFLYDQTFMRNAYENTSSLAEAILVKVSRDLAIPTDDTLMGPV 1494
Query: 197 IKQLEDKF---SDDEYWANNWSNASDHNIKYRIKDTEGIDV 234
+ Q +F S W + S+ I +R+ D+EGI +
Sbjct: 1495 VHQTSSRFRRRSAQPTW--DMSDGCADAIAFRV-DSEGIKL 1532
>gnl|CDD|35088 COG5529, COG5529, Pyocin large subunit [General function prediction
only].
Length = 326
Score = 28.2 bits (62), Expect = 3.3
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 201 EDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSAN 237
+F+D WA N A++ + R G SAN
Sbjct: 225 LTEFADAPLWAKNDYWAAEGKVAQRHFWEHGAAFSAN 261
>gnl|CDD|31710 COG1521, COG1521, Putative transcriptional regulator, homolog of
Bvg accessory factor [Transcription].
Length = 251
Score = 28.0 bits (62), Expect = 4.5
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 2/85 (2%)
Query: 153 TKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWAN 212
T+D L + L + NS + G + +SS+ L++ F
Sbjct: 30 TEDLLTEDELGLQLHNLFDGNSVRDIDG--IVISSVVPPLGIFLEAVLKEYFKVKPLVVI 87
Query: 213 NWSNASDHNIKYRIKDTEGIDVSAN 237
+ + Y + G D AN
Sbjct: 88 SPKQLLGIRVLYDNPEELGADRIAN 112
>gnl|CDD|111841 pfam02995, DUF229, Protein of unknown function (DUF229). Members
of this family are uncharacterized. They are 500-1200
amino acids in length and share a long region
conservation that probably corresponds to several
domains. The Go annotation for the protein indicates
that it is involved in nematode larval development and
has a positive regulation on growth rate.
Length = 498
Score = 26.9 bits (60), Expect = 8.6
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 195 DFIKQLEDKFSDDEYWANNWSNASDHN 221
D+++Q ++ D ++ WSN+ H+
Sbjct: 281 DYLRQFLPRYRDSPFFGFFWSNSLSHD 307
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.314 0.129 0.348
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,793,354
Number of extensions: 188263
Number of successful extensions: 309
Number of sequences better than 10.0: 1
Number of HSP's gapped: 307
Number of HSP's successfully gapped: 13
Length of query: 357
Length of database: 6,263,737
Length adjustment: 95
Effective length of query: 262
Effective length of database: 4,210,882
Effective search space: 1103251084
Effective search space used: 1103251084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.2 bits)