RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780523|ref|YP_003064936.1| flagellar hook-associated
protein FlgL [Candidatus Liberibacter asiaticus str. psy62]
(357 letters)
>gnl|CDD|168344 PRK06008, flgL, flagellar hook-associated protein FlgL; Validated.
Length = 348
Score = 219 bits (560), Expect = 1e-57
Identities = 104/360 (28%), Positives = 179/360 (49%), Gaps = 15/360 (4%)
Query: 1 MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
MKT+ IST ++ + + +L + K E TG+ +D GL LG++ + +E +
Sbjct: 1 MKTSFISTLALQNALRLTIAKLQAELSKAQTEATTGRYADVGLSLGSKTARSVSLRREYD 60
Query: 61 HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
+A SNSLVT+RL+ +Q L + + Q + L L + A R +
Sbjct: 61 RLASLTDSNSLVTQRLTATQTALGQIIEAAQSFLNDL---LAANSSAQTAATVAQSARSA 117
Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFL--EENSKSLL 178
S + N + G+YLF+GIN+ KPL Y S AK + D Q + +
Sbjct: 118 LSSLTSTLNTSVNGEYLFAGINTDVKPLTDYGAPGSAAKTAVDTAFQTYFGFAPGDPA-- 175
Query: 179 AGQHLEVSSMNAQQMTDFIKQ-LEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSAN 237
VS++ A QM DF+ F D W+ NWS+ASD N+ RI TE + S +
Sbjct: 176 ------VSNITAAQMQDFLDGTFAPLF-SDANWSANWSSASDTNMTSRISPTETAETSTS 228
Query: 238 VNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKN 297
N G R + V+ +E L+ A++ +T K ++ Q +SG+ +++ LG+++
Sbjct: 229 ANAEGFRKLAMAYVMVSELGDIGLSSEAQDTVTDKAITYTGQAISGLTTEQSQLGLAQSR 288
Query: 298 INEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
+ + L + +++ I GV+ + A +++ L ++E SY +T++LQ+LS++NYL
Sbjct: 289 VTKANTRLDAQIKLLNGQILDLEGVDPYEASTRVNALQTQLETSYSLTSQLQQLSLVNYL 348
>gnl|CDD|180872 PRK07192, flgL, flagellar hook-associated protein FlgL; Reviewed.
Length = 305
Score = 41.9 bits (99), Expect = 2e-04
Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 15/157 (9%)
Query: 6 ISTSSIFERMNILTKELNKDSVKLHEEMVTGQ-----SSDYGLQLGARVTSILEWEQEKN 60
IST++++ M ++L KL ++M TG+ S D + + +LE +E++
Sbjct: 3 ISTNTLYSTMLRSIQQLQAGLGKLQQQMSTGKRILTPSDD---PIAS--ARLLELSREQS 57
Query: 61 HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
+ ++ + + ++ L+ + HLS + +Q + LV G + A LR
Sbjct: 58 NNSQYADNIANLSNSLNNQEGHLSGVNDQLQSIRSLLVAAGNGSLSDEDRSAMATELRSM 117
Query: 121 YESFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDS 156
+S + AN D EG YLFSG S+ +P T D+
Sbjct: 118 LDSLLGLANAKDSEGNYLFSGTASNTQP----ITFDA 150
>gnl|CDD|181581 PRK08913, flgL, flagellar hook-associated protein FlgL; Validated.
Length = 301
Score = 41.7 bits (98), Expect = 3e-04
Identities = 26/135 (19%), Positives = 52/135 (38%), Gaps = 10/135 (7%)
Query: 225 RIKDTEGIDVSANVNMRGIRDIMFVA--VIGTEFLSKNLTDGARNVLTKKMLSTVQQGLS 282
R+ T+G+ + +M V + LS + A L +
Sbjct: 175 RVSATQGVSYGVTADNSAFEQLMRALMLVANSSSLSSSTLSQA--------LDLASTAVD 226
Query: 283 GIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSY 342
+ + ++ LG + + + +T +S GV+ AQLST ++ SY
Sbjct: 227 DLGDVQSRLGNAASRLTAASSRQTEYKSFAETLLSDLTGVDVAAVTAQLSTYQTQLTASY 286
Query: 343 MITTKLQKLSILNYL 357
+K++ L++ +YL
Sbjct: 287 SAISKMKSLNLASYL 301
>gnl|CDD|181571 PRK08870, flgL, flagellar hook-associated protein FlgL; Reviewed.
Length = 404
Score = 37.2 bits (87), Expect = 0.006
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 117 LRDSYESFVTFANMTDE-GQYLFSGINSSEKPLNGYFTKDS 156
L+ + + AN D G YLF+G S +P F D+
Sbjct: 114 LQGLRDQLLNLANSKDGSGNYLFAGTQSGTQP----FAFDA 150
>gnl|CDD|129812 TIGR00729, TIGR00729, ribonuclease H, mammalian HI/archaeal HII
subfamily. Archaeal members of this subfamily of RNase
H are designated RNase HII and one has been shown to be
active as a monomer. A member from Homo sapiens was
characterized as RNase HI, large subunit.
Length = 206
Score = 33.6 bits (77), Expect = 0.075
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 258 SKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS 317
SK LT G R L K + + + VL I+ + I+ ER N+ N I+ +
Sbjct: 39 SKKLTPGRREELFSK--------IRNKLGRYEVLKITPEEIDRERNINLNE-NEIEKFSK 89
Query: 318 KSIGVEQHTAHA 329
+I + + +
Sbjct: 90 AAIILIEKPSEV 101
>gnl|CDD|79176 PRK12718, flgL, flagellar hook-associated protein FlgL;
Provisional.
Length = 510
Score = 31.7 bits (71), Expect = 0.32
Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 13/149 (8%)
Query: 6 ISTSSIFERMNILTKELNKDSV--KLHEEMVTGQS----SDYGLQLGARVTSILEWEQEK 59
+ST+ I++ N L LN+++ +L E++ +G+ +D L V
Sbjct: 3 LSTALIYQ--NGLNGVLNQEAAMARLQEQLSSGRRVLTPADDPLAAALAVNVSQTSSMNS 60
Query: 60 NHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRD 119
N+ A R + + + +T L S+ K +Q+M+ +V G + L+
Sbjct: 61 NYDANRKQAEQALGAQTNT----LQSVVKNMQEMLKRVVEAGNGTMSDADRQALVIALKG 116
Query: 120 SYESFVTFANMTD-EGQYLFSGINSSEKP 147
+ E V AN TD GQYLFSG +P
Sbjct: 117 AREELVGLANATDGNGQYLFSGYKGFTQP 145
>gnl|CDD|181540 PRK08724, fliD, flagellar capping protein; Validated.
Length = 673
Score = 31.4 bits (71), Expect = 0.39
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 81 AHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGM------LRDSYESFVTFAN 129
A LSS +++D + + + L+GKTD NK P G+ +R+ E FV N
Sbjct: 449 AQLSSNNNVIEDAIEGVDLTLKGKTDKNKPPAEIGVEYDRQSVRNDIEQFVAAYN 503
>gnl|CDD|173155 PRK14692, PRK14692, lagellar hook-associated protein FlgL;
Provisional.
Length = 749
Score = 30.7 bits (69), Expect = 0.59
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 122 ESFVTFANMTDEGQYLFSGINSSEKPLNG 150
ES V AN + GQYLF+G + KP +
Sbjct: 119 ESIVQLANTSVNGQYLFAGSQVANKPFDS 147
>gnl|CDD|181222 PRK08073, flgL, flagellar hook-associated protein FlgL; Validated.
Length = 287
Score = 29.9 bits (67), Expect = 1.1
Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 11/105 (10%)
Query: 51 SILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKF 110
S+ EQ + +A+ S +++ + +T S+ ++ Q ++ L G D +
Sbjct: 55 SLANIEQMQKDVAD---SKNVLNQTENTLSGMSKSLTRVDQLVLQAL----NGTNDEKEL 107
Query: 111 PINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKD 155
+ + V AN ++G+Y+F G ++ +KP FT+D
Sbjct: 108 KAIGAEIDQILKQVVYLANTKEQGRYVFGGDSAEKKP----FTED 148
>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain
(CALCOCO1) like. Proteins found in this family are
similar to the coiled-coil transcriptional coactivator
protein coexpressed by Mus musculus (CoCoA/CALCOCO1).
This protein binds to a highly conserved N-terminal
domain of p160 coactivators, such as GRIP1, and thus
enhances transcriptional activation by a number of
nuclear receptors. CALCOCO1 has a central coiled-coil
region with three leucine zipper motifs, which is
required for its interaction with GRIP1 and may regulate
the autonomous transcriptional activation activity of
the C-terminal region.
Length = 546
Score = 29.6 bits (66), Expect = 1.4
Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Query: 20 KELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTS 79
+E +K++ E M + + + Q ILE EQ+ + ++ N V +
Sbjct: 191 EEQHKEAQSSSESM-SAERNALLAQRAENQQRILELEQDIQTLTQKKQENDRVLEGTQDI 249
Query: 80 QAHLSSMQKIVQDMVGPLVILLE 102
+A L M+ ++ + + I
Sbjct: 250 EAELERMKGELKQRLKKMTIQRR 272
>gnl|CDD|181415 PRK08412, flgL, flagellar hook-associated protein FlgL; Validated.
Length = 827
Score = 27.5 bits (61), Expect = 5.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 122 ESFVTFANMTDEGQYLFSGINSSEKPLNGYFT 153
E + AN + G++LFSG KP++ T
Sbjct: 119 EHMINLANTSIGGEFLFSGSKVDTKPIDSNGT 150
>gnl|CDD|183088 PRK11331, PRK11331, 5-methylcytosine-specific restriction enzyme
subunit McrB; Provisional.
Length = 459
Score = 27.0 bits (59), Expect = 8.2
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 188 MNAQQMTDFIKQLEDKFSDDEYWANNWSN 216
+ MTD LE+ F DD Y W++
Sbjct: 425 LKEIVMTDIAPLLEEYFFDDPYKQQIWAD 453
>gnl|CDD|162917 TIGR02550, flagell_flgL, flagellar hook-associated protein 3. This
protein family consists of flagellar hook-associated
proteins designated FlgL (or HAP3) encoded in bacterial
flagellar operons. A N-terminal region of about 150
residues and a C-terminal region of about 85 residues
are conserved. Members show considerable length
heterogeneity between these two well-conserved terminal
regions; members of the family vary between 287 to over
500 residues in length. This model distinguishes FlgL
from the flagellin gene product FliC.
Length = 306
Score = 26.5 bits (59), Expect = 9.6
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 117 LRDSYESFVTFANMTDE-GQYLFSGINSSEKPLN 149
++ + V AN D G+Y+FSG + P +
Sbjct: 113 IKQLLDQLVNLANTKDGNGRYIFSGTKTDTPPFS 146
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.314 0.129 0.348
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,362,532
Number of extensions: 330503
Number of successful extensions: 482
Number of sequences better than 10.0: 1
Number of HSP's gapped: 475
Number of HSP's successfully gapped: 21
Length of query: 357
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 263
Effective length of database: 3,963,321
Effective search space: 1042353423
Effective search space used: 1042353423
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.2 bits)