RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780523|ref|YP_003064936.1| flagellar hook-associated
protein FlgL [Candidatus Liberibacter asiaticus str. psy62]
(357 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 40.3 bits (94), Expect = 6e-04
Identities = 42/262 (16%), Positives = 77/262 (29%), Gaps = 86/262 (32%)
Query: 112 INAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLN------GYFTK--DSLAKKSFD 163
A L++ + T+ F+ + P GY + + FD
Sbjct: 28 FIASQLQEQFNK--ILPEPTEG----FAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFD 81
Query: 164 QMLQGFLEENSKSLLAGQ--HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHN 221
Q+L L E L G H + + + T +K
Sbjct: 82 QVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK----------------------- 118
Query: 222 IKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGL 281
+ I+ A + + + L V +G
Sbjct: 119 -TKEL----------------IK-NYITAR---IMAKRPFDKKSNSAL----FRAVGEGN 153
Query: 282 SGIIEQRAVLGISEKNIN---EERVFLQNKNNIIDTYISKSIGVEQ--HTAHAQLSTLI- 335
+ ++ A+ G + N + EE L+ ++ TY + V + LS LI
Sbjct: 154 AQLV---AIFG-GQGNTDDYFEE---LR---DLYQTY--HVL-VGDLIKFSAETLSELIR 200
Query: 336 NKIEMSYMITTKLQKLSILNYL 357
++ + T Q L+IL +L
Sbjct: 201 TTLDAEKVFT---QGLNILEWL 219
Score = 36.8 bits (85), Expect = 0.007
Identities = 27/189 (14%), Positives = 52/189 (27%), Gaps = 83/189 (43%)
Query: 178 LAGQHLEVS-------SMNAQQMTD-FIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDT 229
L+ LE A Q+ + F K L + ++ A+D
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEP-TE--------GFAAD---------- 51
Query: 230 EGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRA 289
+ + + +G ++S + Q L
Sbjct: 52 --DEPTTPAEL-------VGKFLG--YVSSLVEPSKV--------GQFDQVL------NL 86
Query: 290 VLGISEKNINE-ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKL 348
L E E +L+ N+I HA + L+ + + TT +
Sbjct: 87 CL-------TEFENCYLEG-NDI----------------HALAAKLLQEND-----TTLV 117
Query: 349 QKLSIL-NY 356
+ ++ NY
Sbjct: 118 KTKELIKNY 126
Score = 34.1 bits (78), Expect = 0.050
Identities = 48/264 (18%), Positives = 90/264 (34%), Gaps = 86/264 (32%)
Query: 151 YFTKDSLAKKSFDQMLQGFL----EENSKSLLA---GQ--------HL-EVSSMNAQQMT 194
Y T +AK+ FD+ L E + L+A GQ L ++ +
Sbjct: 126 YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVG 185
Query: 195 DFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR------DIMF 248
D IK + + + K T+G+++ + + D +
Sbjct: 186 DLIKFSAETL-------SELIRTTLDAEKVF---TQGLNI-----LEWLENPSNTPDKDY 230
Query: 249 VA-------VIGTEFLSKNLTDGARNVLTKKML----STVQQGLS-------GIIEQRAV 290
+ +IG + A V+T K+L ++ L G++ AV
Sbjct: 231 LLSIPISCPLIG-------VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT--AV 281
Query: 291 LGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQL----STLINKIEM-----S 341
I+E + E F + I + IGV + A+ S L + +E S
Sbjct: 282 -AIAETDSWES--FFVSVRKAIT--VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS 336
Query: 342 YMIT------TKLQK-LSILN-YL 357
M++ ++Q ++ N +L
Sbjct: 337 PMLSISNLTQEQVQDYVNKTNSHL 360
Score = 33.8 bits (77), Expect = 0.071
Identities = 45/278 (16%), Positives = 85/278 (30%), Gaps = 125/278 (44%)
Query: 2 KTTGISTSSIFERMNILTKELNKDSVKLHEEMVT--GQ--SSDY--GLQ----------- 44
S S++F + + + +L + GQ + DY L+
Sbjct: 136 PFDKKSNSALFRAVG-------EGNAQL---VAIFGGQGNTDDYFEELRDLYQTYHVLVG 185
Query: 45 -----LGARVTSILEWEQEKNHIAERLHSNSL-VTKRLST-----SQAHLS----SMQKI 89
++ ++ + AE++ + L + + L + +L S
Sbjct: 186 DLIKFSAETLSELIRTTLD----AEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC--- 238
Query: 90 VQDMVGPLVILLE-----------GKTDNNKFPINAGMLR-------------------- 118
PL+ +++ G T P G LR
Sbjct: 239 ------PLIGVIQLAHYVVTAKLLGFT-----P---GELRSYLKGATGHSQGLVTAVAIA 284
Query: 119 --DSYESFVTFANMTDEGQYLFS-GINSSEKPLNGYFTKDSLAKK----SFDQ------- 164
DS+ESF F ++ LF G+ E + SL S +
Sbjct: 285 ETDSWESF--FVSVRKAITVLFFIGVRCYE-----AYPNTSLPPSILEDSLENNEGVPSP 337
Query: 165 ML----------QGFLEENSKSLLAGQHLEVSSMNAQQ 192
ML Q ++ + + L AG+ +E+S +N +
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK 375
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural
genomics, PSI-2, protein structure initiative; HET: MSE;
2.05A {Porphyromonas gingivalis}
Length = 434
Score = 31.6 bits (71), Expect = 0.29
Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 8/127 (6%)
Query: 163 DQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNI 222
+ + G + K+L G+ + M ++ + FI + D + N+ + ++
Sbjct: 250 ELVRSGVITGKKKTLHPGKMVATFLMGSEDVYHFIDKNPDVELYPVDYVNDPRVIAQNDN 309
Query: 223 KYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKK----MLSTVQ 278
I ID+ V I F G + GA K + ST +
Sbjct: 310 MVSINSCIEIDLMGQVVSECIGSKQFSGTGG----QVDYVRGAAWSKNGKSIMAIPSTAK 365
Query: 279 QGLSGII 285
G + I
Sbjct: 366 NGTASRI 372
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Length = 295
Score = 29.2 bits (64), Expect = 1.4
Identities = 5/49 (10%), Positives = 19/49 (38%)
Query: 161 SFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEY 209
S D + +G + ++ +++ MN++ + + + +
Sbjct: 15 SLDLIYKGIQDGLAEEGYKDDQVKIDFMNSEGDQSKVATMSKQLVANGN 63
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 2.80A
{Porphyromonas gingivalis W83}
Length = 439
Score = 29.2 bits (65), Expect = 1.4
Identities = 18/123 (14%), Positives = 37/123 (30%), Gaps = 8/123 (6%)
Query: 167 QGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRI 226
+G + K+L + + ++++ DF+ + NN ++ I
Sbjct: 251 KGIINGKKKTLHPEKVVTSLIFGSKELYDFVNNNPVIECYPVDYINNPDVIGKNDRMVSI 310
Query: 227 KDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKK----MLSTVQQGLS 282
+D+ I F G + GA+ ST ++G
Sbjct: 311 NSCLEMDLMGQAASESIGYEQFSGSGG----QVDFLRGAKRSKGGISIMAFPSTAKKGTE 366
Query: 283 GII 285
I
Sbjct: 367 SRI 369
>1cvu_A Prostaglandin H2 synthase-2; COX-2, cyclooxygenase, prostaglandin,
arachidonate, endoperoxide, oxidoreductase; HET: NAG MAN
BOG ACD; 2.40A {Mus musculus} SCOP: a.93.1.2 g.3.11.1
PDB: 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 1pxx_A*
1ddx_A*
Length = 552
Score = 27.9 bits (62), Expect = 3.8
Identities = 22/167 (13%), Positives = 47/167 (28%), Gaps = 38/167 (22%)
Query: 55 WEQEKNHIAERLHSNSL---------VTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKT 105
W +E + + L +K + + KIV + + G
Sbjct: 274 WLREHQRVCDILKQEHPEWGDEQLFQTSKLILIGE-----TIKIVIEDYVQHLS---GYH 325
Query: 106 DNNKFPINAGMLRDSYESFVTFAN-MTDEGQYLFSG---------INSSEKPLNGYFTKD 155
KF + + N + E L+ I E + +
Sbjct: 326 FKLKFD-----PELLFNQQFQYQNRIASEFNTLYHWHPLLPDTFNIEDQEYSFKQFLYNN 380
Query: 156 S-LAKKSFDQMLQGFLEENSKSLLAGQH-----LEVSSMNAQQMTDF 196
S L + Q ++ F + + + G++ V+ + Q +
Sbjct: 381 SILLEHGLTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREM 427
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
insolens} SCOP: c.47.1.2
Length = 133
Score = 26.4 bits (58), Expect = 9.6
Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 9/99 (9%)
Query: 138 FSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFI 197
+S S+ PL F + + +K L+ E + +++A F
Sbjct: 16 YSDYMSAGIPLAYIFAETAEERKELSDKLKPIAEAQRGVIN------FGTIDA---KAFG 66
Query: 198 KQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSA 236
+ + + N K+ + I A
Sbjct: 67 AHAGNLNLKTDKFPAFAIQEVAKNQKFPFDQEKEITFEA 105
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.314 0.129 0.348
Gapped
Lambda K H
0.267 0.0598 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,689,233
Number of extensions: 116076
Number of successful extensions: 217
Number of sequences better than 10.0: 1
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 14
Length of query: 357
Length of database: 5,693,230
Length adjustment: 93
Effective length of query: 264
Effective length of database: 3,438,538
Effective search space: 907774032
Effective search space used: 907774032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.0 bits)