HHsearch alignment for GI: 254780524 and conserved domain: COG1749
>COG1749 FlgE Flagellar hook protein FlgE [Cell motility and secretion].
Probab=100.00 E-value=0 Score=365.41 Aligned_cols=405 Identities=16% Similarity=0.117 Sum_probs=230.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECC------------CCEEEEEEEEEHHHHHHHHHHHH
Q ss_conf 358899999999999998678744202578998126799986046------------60699899872068878887754
Q gi|254780524|r 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------------ENVTVVTQRSENKNMFDKVLHAH 70 (480)
Q Consensus 3 l~~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~~~------------~g~~~~~~~~~~~~~~~~~~~~~ 70 (480)
T Consensus 1 m~~s~~~gvSGm~a~q~~LdvisnNIANanT~GfK~s~~~F~dm~s~s~~g~~~~~~~Gv~~s~i~---~i~~qG~~~~T 77 (423)
T COG1749 1 MLRSFYNGVSGMNAHQFALDVISNNIANANTTGFKRSRAEFSDMFSQSLVGASTYTALGVGVSSIS---QIFTQGSFQST 77 (423)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEE---EECCCCCEEEC
T ss_conf 916776666667776640332023413454521132675066320100045544676671466458---85158854764
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 44556788787899888651267777764011366777668764138675300112210122222210002245656654
Q gi|254780524|r 71 SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150 (480)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (480)
T Consensus 78 ~~~~DlAI~G~GFF~v~~~-----~~~~~~yTRaG~F~~D~~g~LVn~~G~~l~G~~~~~~~~~~~~~~~----~~~i~i 148 (423)
T COG1749 78 GSNLDLAISGNGFFIVQDD-----SGGTNFYTRAGSFRLDKNGYLVNPAGLYLQGYPANGVTGGINGGTT----LLNIQI 148 (423)
T ss_pred CCCCCEEEECCEEEEEEEC-----CCCCEEEEECCCCCCCCCCCEECCCCCEEEEEECCCCCCCCCCCCC----CCCEEC
T ss_conf 7863579916717999716-----8984588866750176788677688737973124688875114555----332133
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCEEEEECCCCEEEECC
Q ss_conf 32000111278788754343210112223456676521001210000101002012478733771147870697061034
Q gi|254780524|r 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 (480)
Q Consensus 151 ~~~~~~~~~v~~~n~~~~~~~~~n~~~~~~~~~~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~~g~~l~~~ 230 (480)
T Consensus 149 ~~~~~~~a~~tt---~~~~~~NL~~~~~--~~~~~~~~---n~~~~------------~~~~~~~s~~~yDs~G------ 202 (423)
T COG1749 149 PNNNGLPAKATT---NVSFSANLNSGAI--VPSITAPF---NPTDT------------ATYNYKTSLTVYDSLG------ 202 (423)
T ss_pred CCCCCCCCCCCE---EEEEEECCCCCCC--CCCCCCCC---CCCCC------------CCCCCCEEEEEECCCC------
T ss_conf 456676764320---6522101487775--65346787---87653------------2114531599992689------
Q ss_pred CCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCC----HHHCCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 441257630456667664321673365566567766676531110----1110233136778788765543100123455
Q gi|254780524|r 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL----LQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 (480)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (480)
T Consensus 203 --~~~~~~~~f~k~~~~tw~v~~~~~~~~~------~p~g~a~~~~~~~l~Fd~~-------------G~L~s~~----~ 257 (423)
T COG1749 203 --NKHTLDVYFVKTGTNTWQVYVLVKSQTG------DPDGTADTGTTFTLEFDPA-------------GALTSGE----P 257 (423)
T ss_pred --CEEEEEEEEEECCCCCEEEEEEECCCCC------CCCCCCCCCCEEEEEECCC-------------CCCCCCC----C
T ss_conf --5123567999447871269999435666------8887666664257887798-------------8601278----8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 77777765432112234566665-43322222233333466621000-24566665555666544310245676642011
Q gi|254780524|r 307 IAGNSENVPGLFIADGIKDLDNK-LCQGISETICVNPQYRSNPSFLR-DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 (480)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (480)
T Consensus 258 ~~~~~~~--------~~~~~~G~~~~~~~~~~~~~s~~~~~~~~~~~~~~qdGy~~G~l~~~~I~~dG~I~~~ysNG~~~ 329 (423)
T COG1749 258 GPTEIVG--------PNVAVNGATLAQGISLDLTGSTQQSTGFSLTVASTQDGYAPGNLKDYRIDEDGVIVGVYSNGVTQ 329 (423)
T ss_pred CCCCCCC--------CCCCCCCCCCCCEEEECCCCCEEEECCCCEEEEEECCCCCCEEEEEEEECCCCEEEEEEECCCEE
T ss_conf 8643446--------66565763002204532577548851300134563367553057789977997899997188264
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11233334567765289999877788766421112322345679999999887662888899999999999999999999
Q gi|254780524|r 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 (480)
Q Consensus 385 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakv 464 (480)
T Consensus 330 ~~gqIaLa~F~N~~GL~~~ggN~--~~~t~~SG~~~~g~~g~g~~G~i~~gaLE~SNVDls~EltnmIvaQR~YqANsK~ 407 (423)
T COG1749 330 PLGQIALANFANPQGLVKEGGNV--YAATNNSGAASLGAAGVGGFGKISSGALEMSNVDLAKELTNLIVAQRGYQANAKV 407 (423)
T ss_pred EEEEEEEEECCCCCCCCCCCCCE--EEECCCCCCEEECCCCCCCCEEECCCCCEECCCHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 66678877304801062158957--8511567861444688787302501633211211899999988866504445506
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 9999999999987409
Q gi|254780524|r 465 IMFTDKMLQTLLEGVK 480 (480)
Q Consensus 465 ItT~Demlq~Lin~~R 480 (480)
T Consensus 408 i~T~D~mlq~lvnLkr 423 (423)
T COG1749 408 ITTSDQMLQTLVNLKR 423 (423)
T ss_pred EEEHHHHHHHHHHHCC
T ss_conf 8605899999986229