HHsearch alignment for GI: 254780524 and conserved domain: COG4787

>COG4787 FlgF Flagellar basal body rod protein [Cell motility and secretion].

Probab=97.56  E-value=2.6e-06  Score=55.78  Aligned_cols=104  Identities=11%  Similarity=0.074  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEC-------CCCEEEEEEEEEHHHHHHHHHHHHHHHHH
Q ss_conf             35889999999999999867874420257899812679998604-------66069989987206887888775444556
Q gi|254780524|r    3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQRSENKNMFDKVLHAHSSAIG   75 (480)
Q Consensus         3 l~~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (480)
T Consensus         1 MD~aiy~aM~aA~Q~l~~qa~~ANNLAN~STtGFraql~a~rav~v~g~~~ptrt~~-~~s~pg~d~spG~l~~TgR~LD   79 (251)
T COG4787           1 MDHAIYTAMGAASQLLEQQAVTANNLANASTTGFRAQLNAARAVQVHGDSLPTRTFV-MASTPGTDMSPGSLDYTGRPLD   79 (251)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHEEE-ECCCCCCCCCCCCCCCCCCCCE
T ss_conf             923789887888888998887751421356631789998863012468875201035-4146765678861013688530


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             78878789988865126777776401136677766876
Q gi|254780524|r   76 QQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES  113 (480)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (480)
T Consensus        80 vaiq~DGwlaVq~~------dG~EaYTRnG~~qI~a~g  111 (251)
T COG4787          80 VAIQGDGWLAVQDA------DGSEAYTRNGNIQIDATG  111 (251)
T ss_pred             EEECCCCEEEEECC------CCCCHHEECCCEEECCCC
T ss_conf             79736856999868------875011115746787654