HHsearch alignment for GI: 254780524 and conserved domain: PRK05683
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated.
Probab=100.00 E-value=0 Score=388.64 Aligned_cols=469 Identities=17% Similarity=0.211 Sum_probs=345.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEC----------CCCEEEEEEEEEHHHHHHHHHHHHHHHH
Q ss_conf 889999999999999867874420257899812679998604----------6606998998720688788877544455
Q gi|254780524|r 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQRSENKNMFDKVLHAHSSAI 74 (480)
Q Consensus 5 ~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~~----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (480)
T Consensus 2 sll~ig~sgL~a~q~al~vt~~NIaN~nT~GYsRq~v~~~~~~~~~~~~~~~G~Gv~v~~i~R~~d~fl~~~~~~~~s~~ 81 (676)
T PRK05683 2 SLISIGLSGLGASQTALATTGNNIANVDTAGYSRQQAVQTTKASQFSGAGYIGTGTTLADVRRIYNSFLDAQLRTATSLN 81 (676)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCEECCEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_conf 67899999999999999987366641799881401666313467556785031588973598816089999999998777
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 67887878998886512677777640113667776687641386753001122101222222100022456566543200
Q gi|254780524|r 75 GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154 (480)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (480)
T Consensus 82 ~~~~~~~~~l~~~e~~~~~--~~~gl~~~l~~ff~a~~~ls~~P~~~~~r~~~~~~a~~l~~~~~~~~~~l~~~~~~~~~ 159 (676)
T PRK05683 82 SDASAYLGQITQLDSLLSD--STTGISPALQRFFTALQTAAANPTDDASRQLLLTQAQGLSKRFNSLSSQLNQQNSNINS 159 (676)
T ss_pred HHHHHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999987478--88647999999999999998688988999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCEEEEECCCCEEEECCCCC-
Q ss_conf 0111278788754343210112223456676521001210000101002012478733771147870697061034441-
Q gi|254780524|r 155 EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR- 233 (480)
Q Consensus 155 ~~~~~v~~~n~~~~~~~~~n~~~~~~~~~~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~~g~~l~~~~~~- 233 (480)
T Consensus 160 ~i~~~v~~iN~l~~~Ia~LN~~I~~~~~~g~~~ndL~DqRD~ll~eLS~~v~i~v~~~-dg~~~v~~~~G~~LV~g~~~~ 238 (676)
T PRK05683 160 QLSAMTSQVNNLTTSIAEYNDQIAKASAAGATPNDLLDARDEAVRQLSELVGVTVVER-DGNYDLYIGSGQPLVVGNTAN 238 (676)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEC-CCCEEEEECCCCEEEECCCEE
T ss_conf 9999999999999999999999998535799961578999999999986529599974-896899966982578467137
Q ss_pred EEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 25763045666766432167336556656776667653111011102331367787887655431001234557777776
Q gi|254780524|r 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313 (480)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (480)
T Consensus 239 ~l~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~gG~lggll~~r~~~l~~~~~~l~~la~~~~~~~N~~~~~G~d~~g 315 (676)
T PRK05683 239 TLSVVPGPD--DPTR-YNVQLNRGSSTQDVTSLVTGGEIGGLLRYRSEVLDPAMNELGRLALVVADQINSQLGQGIDLNG 315 (676)
T ss_pred EEEEEECCC--CCCE-EEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 899874688--9860-5899726875333555557761103456543012677878878999999998888743757788
Q ss_pred CCCCCCCCCCCCC-------------------------C--------------C----------------------CCCC
Q ss_conf 5432112234566-------------------------6--------------6----------------------5433
Q gi|254780524|r 314 VPGLFIADGIKDL-------------------------D--------------N----------------------KLCQ 332 (480)
Q Consensus 314 ~~~~~~~~~~~~~-------------------------~--------------~----------------------~~~~ 332 (480)
T Consensus 316 ~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~~~~v~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~ 395 (676)
T PRK05683 316 NFGANLFGDINSADAISQRSLAKNGNSAGSGNLDVTITDTSKLTTSDYEVTFTSATNYTVRRLSDGTDMGSYDLSDNPAP 395 (676)
T ss_pred CCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 64543223566400002331014667777531689970277645442279960677406886578860454334578764
Q ss_pred CCC-C--CCCCCCCCCCCCCCC--------------CCC-------------CCCCC-C-C-------------------
Q ss_conf 222-2--223333346662100--------------024-------------56666-5-5-------------------
Q gi|254780524|r 333 GIS-E--TICVNPQYRSNPSFL--------------RDG-------------GSVSK-K-F------------------- 361 (480)
Q Consensus 333 ~~~-~--~~~~~~~~~~~~~~~--------------~~~-------------~~~~~-~-~------------------- 361 (480)
T Consensus 396 ~~~g~~~~i~~~~~~~gd~~~~~p~~~~~~~i~~~l~~~~~~a~a~~~~~~~~~~n~g~~~~~~~~~~~~~~~~~~~~~~ 475 (676)
T PRK05683 396 VIDGFSLSLNGGTLAAGDSFKVTPTRNAASDIETTLTDAKRLAFAAPLTATAGSGNSGTGTITQPTLTSKLDIYDPAQTA 475 (676)
T ss_pred CCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCEEECCHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf 33535898537763457616873222443452013048777432155422235577675313013212344566743210
Q ss_pred -----CCC------------------------------CCCCCCCH----------------------------------
Q ss_conf -----556------------------------------66544310----------------------------------
Q gi|254780524|r 362 -----LWN------------------------------VKNLAGYP---------------------------------- 372 (480)
Q Consensus 362 -----~~~------------------------------~~~~~~~~---------------------------------- 372 (480)
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (676)
T PRK05683 476 DLQNAIKNSTPVKLVFGATSGGPQGYTLVDAKGNAIGSGTIVPGQSNTLKLAVPMVDASGNPGVGKTFTVEMTISGSPQA 555 (676)
T ss_pred HHCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEECCCCCC
T ss_conf 00022356776214632677876531565267750356420357665301101344566777655442156653377467
Q ss_pred ----------HHHHHHHHHHCCCCCCC----CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ----------24567664201111233----3345677652899998777887664211123223456799999998876
Q gi|254780524|r 373 ----------DLINHYCDSFNKNFIFD----PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438 (480)
Q Consensus 373 ----------~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE 438 (480)
T Consensus 556 ~d~~~~~~~~~g~~Dn~nal~la~l~~~~~~~~~~~~~~~Tl~d~y~~lvs~vG~~a~~A~~~~~~q~~l~~~~~~~r~S 635 (676)
T PRK05683 556 GDSFTVSFNGAGSSDNRNALALVGLQTKSTVGVGSGGTGISLTDAYGKLVERVGTLASQARADADATAAVLKQAQDSRDS 635 (676)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87134404677778769999999644235423667878744999999999999999999999999999999999999985
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 62888899999999999999999999999999999998740
Q gi|254780524|r 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 (480)
Q Consensus 439 ~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~ 479 (480)
T Consensus 636 vSGVnlDEE~anLikfQqaY~AaArvItt~deMlDtLln~~ 676 (676)
T PRK05683 636 LSGVSLDEEAANLIKFQQYYTASSQIIKAAQETFDTLINAL 676 (676)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 62503999999999999999999999999999999997349