HHsearch alignment for GI: 254780524 and conserved domain: PRK05841
>PRK05841 flgE flagellar hook protein FlgE; Validated.
Probab=100.00 E-value=0 Score=391.54 Aligned_cols=122 Identities=13% Similarity=0.128 Sum_probs=103.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH
Q ss_conf 6665555666544310245676642011112333345677652899998777887664---------2111232234567
Q gi|254780524|r 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN---------RSDSHDLHMKSQV 427 (480)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~t~---------~sg~~~~~~~~~~ 427 (480)
T Consensus 473 G~~~G~L~~~~Id~dG~I~g~ysNG~~~~l~qIalA~F~N~~GL~~~G~n~--y~~T~~s~~~~~~~~SG~~~~g~~g~G 550 (605)
T PRK05841 473 GKPRGIFRDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQGLRKIGGNL--YEMQEGTINGENRPLSGNPILGWDEEG 550 (605)
T ss_pred CCCEEEEEEEEECCCCEEEEEECCCCEEEEEEEEEEEECCHHHHHHCCCCE--EEECCCCCCCCCCCCCCCCEECCCCCC
T ss_conf 800367777898999489999869968788999898536857723226955--652125545666567787343357778
Q ss_pred HH--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99--999998876628888999999999999999999999999999999987409
Q gi|254780524|r 428 VF--NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 428 ~~--g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
T Consensus 551 ~~~~GsI~~~aLE~SNVDLa~Eft~mIvtQR~yQANsKvITTsD~mLqelinLKR 605 (605)
T PRK05841 551 KLKFGKIRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK 605 (605)
T ss_pred CCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCHHHCEEEEEHHHHHHHHHHHCC
T ss_conf 8764316247620133058999999999876520541278768999999986259