HHsearch alignment for GI: 254780524 and conserved domain: PRK05841

>PRK05841 flgE flagellar hook protein FlgE; Validated.
Probab=100.00  E-value=0  Score=391.54  Aligned_cols=122  Identities=13%  Similarity=0.128  Sum_probs=103.9

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH
Q ss_conf             6665555666544310245676642011112333345677652899998777887664---------2111232234567
Q gi|254780524|r  357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN---------RSDSHDLHMKSQV  427 (480)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~t~---------~sg~~~~~~~~~~  427 (480)
T Consensus       473 G~~~G~L~~~~Id~dG~I~g~ysNG~~~~l~qIalA~F~N~~GL~~~G~n~--y~~T~~s~~~~~~~~SG~~~~g~~g~G  550 (605)
T PRK05841        473 GKPRGIFRDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQGLRKIGGNL--YEMQEGTINGENRPLSGNPILGWDEEG  550 (605)
T ss_pred             CCCEEEEEEEEECCCCEEEEEECCCCEEEEEEEEEEEECCHHHHHHCCCCE--EEECCCCCCCCCCCCCCCCEECCCCCC
T ss_conf             800367777898999489999869968788999898536857723226955--652125545666567787343357778


Q ss_pred             HH--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99--999998876628888999999999999999999999999999999987409
Q gi|254780524|r  428 VF--NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK  480 (480)
Q Consensus       428 ~~--g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R  480 (480)
T Consensus       551 ~~~~GsI~~~aLE~SNVDLa~Eft~mIvtQR~yQANsKvITTsD~mLqelinLKR  605 (605)
T PRK05841        551 KLKFGKIRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK  605 (605)
T ss_pred             CCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCHHHCEEEEEHHHHHHHHHHHCC
T ss_conf             8764316247620133058999999999876520541278768999999986259