HHsearch alignment for GI: 254780524 and conserved domain: PRK06665
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated.
Probab=100.00 E-value=0 Score=418.97 Aligned_cols=471 Identities=19% Similarity=0.239 Sum_probs=356.0
Q ss_pred CC-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE-----------------CCCCEEEEEEEEEHHHH
Q ss_conf 91-3588999999999999986787442025789981267999860-----------------46606998998720688
Q gi|254780524|r 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------------SPENVTVVTQRSENKNM 62 (480)
Q Consensus 1 Ms-l~~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~-----------------~~~g~~~~~~~~~~~~~ 62 (480)
T Consensus 1 M~s~F~~L~ig~sgL~a~Q~aL~ttg~NIANvnT~GYsRQ~v~~~a~~p~~~~~~~~~~~~G~~G~GV~v~~I~R~~D~f 80 (628)
T PRK06665 1 MDSTFSGIEIGKRSLFAHKQAMQTTGHNISNASKPGYSRQRVTMKTEDPLYAPQLNRANKPGQIGQGVTIQSIERVRDEL 80 (628)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEHHHHH
T ss_conf 98524269999999999999999885766417998805217664123664456545455678767888972798715189
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHH
Q ss_conf 78887754445567887878998886512677777640113667776687641386753001122101222222100022
Q gi|254780524|r 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSA 142 (480)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (480)
T Consensus 81 l~~q~r~~~s~~~~~~~~~~~l~~le~~f~e~-~~~gl~~~l~~ff~a~q~la~~P~~~~~R~~vl~~a~~L~~~~n~~~ 159 (628)
T PRK06665 81 LDDRIIEESHRLGYWASRDKYISLLEQVYNEP-EDQSLRTRLDDFWSSWQDLSNYPEGLAERQVVLERAQALGERIEDRY 159 (628)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999888779999999999999983898-77868999999999999998686888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCEEEEECC
Q ss_conf 45656654320001112787887543432101122234566765210012100001010020124787337711478706
Q gi|254780524|r 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 (480)
Q Consensus 143 ~~~~~~~~~~~~~~~~~v~~~n~~~~~~~~~n~~~~~~~~~~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~ 222 (480)
T Consensus 160 ~~L~~~~~~~n~~i~~~V~~iN~l~~~Ia~LN~qI~~~~~~g~~~NdLlDqRD~ll~eLS~~v~i~v~~~~~~~~~~~~~ 239 (628)
T PRK06665 160 RSLERIRDMANDEIEITTEEVNNYLRNIADLNEQIVKSQAMGDNPNDLMDKRDLLVEKLSNLIDVSIENRSDPNEFLIHI 239 (628)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEC
T ss_conf 99999999999999999999999999999999999972057999247789999999999866392899816995699962
Q ss_pred CCEEEECCCCC-EEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 97061034441-25763045666766432167336556656776667653111011102331367787887655431001
Q gi|254780524|r 223 DGTTLFETVPR-DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 (480)
Q Consensus 223 ~g~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (480)
T Consensus 240 ~G~~LV~g~~~~~l~~~~~~~~--~~~~~-i~~~~~----g~~~~~~~G~lggll~~Rd~~l~~~~~~ld~lA~~l~~~~ 312 (628)
T PRK06665 240 EGQHLVQGNIANEFDLEANNGP--DGTWD-ILWSAN----GDPALLRTGKLGALIEIRDTEIRNEINELDNLAINIMDLV 312 (628)
T ss_pred CCEEEEECCCEEEEEEEECCCC--CCEEE-EEECCC----CCEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHH
T ss_conf 8836540674457998735899--84189-998268----9621025862123565313314889988879999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----------------------------CCCCCCCCCCCCCC--------
Q ss_conf 23455777777654321122345666654-----------------------------33222222333334--------
Q gi|254780524|r 302 SEKDPIAGNSENVPGLFIADGIKDLDNKL-----------------------------CQGISETICVNPQY-------- 344 (480)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~-------- 344 (480)
T Consensus 313 N~~~~~G~~l~g~~g~~~f~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 392 (628)
T PRK06665 313 NEIHKDGFGLNGKTGRSFFKQEYKLTNTRGRYDSNGDGQFDSVHIFRITGTNEIDPDEKIGFSGTLTFQASNKNGFIEIP 392 (628)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCEECC
T ss_conf 89987275878876522223432234554321246776444302664046644465433554534675205787613324
Q ss_pred -------------------------CCCCCCC---------------------------------CCCCCCCCCC-----
Q ss_conf -------------------------6662100---------------------------------0245666655-----
Q gi|254780524|r 345 -------------------------RSNPSFL---------------------------------RDGGSVSKKF----- 361 (480)
Q Consensus 345 -------------------------~~~~~~~---------------------------------~~~~~~~~~~----- 361 (480)
T Consensus 393 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~ 472 (628)
T PRK06665 393 YNATDTVNDVIKRINNSNAQVTAYINHNNKLELKATKEEDDDNPNFRIRHIEDSGLFLTGYTGILNASGPEGAYDYQRIG 472 (628)
T ss_pred CCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 67763067788752145544213315787434303334567776402320256641003555301246766543334566
Q ss_pred -----CCCCCCCC-----------CCH-H-------------------HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf -----55666544-----------310-2-------------------45676642011112333345677652899998
Q gi|254780524|r 362 -----LWNVKNLA-----------GYP-D-------------------LINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 (480)
Q Consensus 362 -----~~~~~~~~-----------~~~-~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (480)
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~a~~~~v~~~~~~d~~~ia~~~~~~~~~~~~gdn~~al~l~~l~~~~~~~~~~~T~~d~y~ 552 (628)
T PRK06665 473 TINKLQANGADYSISPLKHPAAWFKVADSIASDPSNIAAGIGKPTNGTHIGDNNAALRIASLRNSPVMIGKSKTLDDFFA 552 (628)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHH
T ss_conf 42222457653224666676531032455405868762146667788888965999999861126512689812999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77788766421112322345679999999887662888899999999999999999999999999999998740
Q gi|254780524|r 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 (480)
Q Consensus 406 ~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~ 479 (480)
T Consensus 553 ~lv~~vG~~~~~a~~~~~~~~~l~~~~~~~r~svSGVnlDEE~anLikfQqaY~AsArvIst~dem~dtLln~l 626 (628)
T PRK06665 553 NTASNIGIKGQIAEITKNSQNQILKELTDMRQSVSGVNKDEELANMIEFQQSYNASAKFINVSNELLDTIINRM 626 (628)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999999999999999998763602999999999999999999999999999999998734