HHsearch alignment for GI: 254780524 and conserved domain: PRK06799
>PRK06799 flgK flagellar hook-associated protein FlgK; Validated.
Probab=100.00 E-value=0 Score=376.62 Aligned_cols=417 Identities=15% Similarity=0.193 Sum_probs=324.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEC------------CCCEEEEEEEEEHHHHHHHHHHHH
Q ss_conf 35889999999999999867874420257899812679998604------------660699899872068878887754
Q gi|254780524|r 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTVVTQRSENKNMFDKVLHAH 70 (480)
Q Consensus 3 l~~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~~------------~~g~~~~~~~~~~~~~~~~~~~~~ 70 (480)
T Consensus 2 ~~S~~n~a~SGl~A~q~al~vts~NIANanT~GYsRq~v~~~~~~~~~~~~~~~~~G~GV~v~~v~R~~d~~l~~~~~~~ 81 (431)
T PRK06799 2 RLSDYNTPLSGMLAAQMGLQTTQQNLSNIHTPGYVRQMVNYGSVGASGGLLPEQRIGYGVQTLGVDRITDEVKTKQYNDQ 81 (431)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHH
T ss_conf 64245699999999999999887857407998906147220134678777777755578898068871508999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 44556788787899888651267777764011366777668764138675300112210122222210002245656654
Q gi|254780524|r 71 SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150 (480)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (480)
T Consensus 82 ~s~~~~~~~~~~~l~~~e~~~~~~~-~~~ls~~l~~ff~a~~~la~~P~~~~~r~~v~~~a~~la~~~n~~~~~l~~~~~ 160 (431)
T PRK06799 82 LSQLSYYNYMNSALSRVESMVGTTG-KNSLSSLMDGFFNAFREVAKNPEQANYYDTLISETGKFTSQLNRLAKGLDELEA 160 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9998899999999999999848988-885789999999999999859687789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCE-EEEECCCCEEEEC
Q ss_conf 320001112787887543432101122234566765210012100001010020124787337711-4787069706103
Q gi|254780524|r 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND-MVVYTSDGTTLFE 229 (480)
Q Consensus 151 ~~~~~~~~~v~~~n~~~~~~~~~n~~~~~~~~~~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~-~~v~~~~g~~l~~ 229 (480)
T Consensus 161 ~~~~~i~~~V~~iN~ll~~ia~lN~~I~~--~~~~~~ndLlDqRD~ll~~LS~~v~i~v~~~~~~~~~~~v~~gG~~lv~ 238 (431)
T PRK06799 161 QTTEDIEAHVNEFNRLAKSLAEANKKIGQ--AGTQVPNQLLDERDRILTEMSKYANIEVSYESMNPNIASVRMNGVLTVN 238 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEEEECCCEEEEE
T ss_conf 99999999999999999999999999975--3599931778869999999973008388863489854898439748984
Q ss_pred CCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 44412576304566676643216733655665677666765311101110233136778788765543100123455777
Q gi|254780524|r 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309 (480)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (480)
T Consensus 239 g~~~~-~l~~~~~----~~~~~~~~~g------~~~~~~~G~l~g~~~~~~~-l~~~~~~Ld~~A~~la~~~N~~~g~~~ 306 (431)
T PRK06799 239 GQDTY-PLQLNKE----KEPMSVEIYG------SEIPLPSGAIISAIDTKAK-IASYKKNLEELMSSVKNQVNTVMGKSF 306 (431)
T ss_pred CCCEE-EEEECCC----CCCCEEEECC------CCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 78204-6552147----8873266537------1347788613566644855-999999999999999999861136787
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 77765432112234566665433222222333334666210002456666555566654431024567664201111233
Q gi|254780524|r 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 (480)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (480)
T Consensus 307 f~~~~--------------------ag~~~~n~~~~~d~~~~~~~---------------~--~~----a~----~~a~~ 341 (431)
T PRK06799 307 FVGDS--------------------AKKWKLNPEFAKDVSKMKIS---------------A--ET----AN----KLAAI 341 (431)
T ss_pred CCCCC--------------------CCCEEECHHHCCCCCCCCCC---------------C--HH----HH----HHHHC
T ss_conf 77788--------------------77655565323672003544---------------3--11----56----66524
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33456776528999987778876642111232234567999999988766288889999999999999999999999999
Q gi|254780524|r 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 (480)
Q Consensus 390 ~~~~~~~~~~l~~~~~~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~D 469 (480)
T Consensus 342 ~~~~~~~g~t~~~~~~~~v~~~~~~~~~a~~~~~~~~~~~~~~~~~r~svsGVnlDEE~~nLl~~QqaY~A~AkvIst~d 421 (431)
T PRK06799 342 TDDKYKEGLSYKQALDQFIVGVASDKSAVNAYQKIHTDLLEGIQQEKMSLEGVNMEEEMVNLMAFQKYFVANSKAITTMN 421 (431)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 47887787658999999999999999999999999999999999999825383888999999999999999999999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999998740
Q gi|254780524|r 470 KMLQTLLEGV 479 (480)
Q Consensus 470 emlq~Lin~~ 479 (480)
T Consensus 422 emldtLLniv 431 (431)
T PRK06799 422 EVFDSLFSII 431 (431)
T ss_pred HHHHHHHHHC
T ss_conf 9999998439