HHsearch alignment for GI: 254780524 and conserved domain: PRK06803
>PRK06803 flgE flagellar hook protein FlgE; Validated.
Probab=100.00 E-value=0 Score=371.75 Aligned_cols=392 Identities=16% Similarity=0.111 Sum_probs=223.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCEEEEEE--EEEHHHHH-HHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999867874420257899812679998604660699899--87206887-8887754445567887878
Q gi|254780524|r 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ--RSENKNMF-DKVLHAHSSAIGQQRLLQS 82 (480)
Q Consensus 6 sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~~~~g~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 82 (480)
T Consensus 2 S~~~gvSGl~a~~~~ldvIsNNIANvnT~GfK~s~~~F~dl~~~~~~gGv~~~~~~~~~~~~G~l~~T~~~~DlAI~G~G 81 (398)
T PRK06803 2 SFNIALSGLNATTQQLNTISNNIANSSTKGFKGSRTEFASIYNGGQAGGVEVSSVSQNFSKGGSLTYTGRGLDLAISGGG 81 (398)
T ss_pred CHHHHHHHHHHHHHCCHHHHHHHHHCCCHHCCCCCCCHHHHHCCCCCCCEEEEEEEEEEECCCCEEECCCCEEEEECCCC
T ss_conf 68999999999885643663577757853107562054675476677854876777776068875666980269981686
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99888651267777764011366777668764138675300112210122222210002245656654320001112787
Q gi|254780524|r 83 FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 (480)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 162 (480)
T Consensus 82 FF~V~~~------~g~~~YTRaG~F~~D~~G~Lv~~~G~~l~G~~~d~~g~~~~~------~~~~i~i~~~~~~~~aTt~ 149 (398)
T PRK06803 82 FFVLKGS------DGDTAYTRAGMFRSDVDGYLTDPQGMKLQGYPVDAAGNIQTG------NVSDLQVQTASLPAKATDQ 149 (398)
T ss_pred EEEEECC------CCCEEEECCCEEEEEECCEEEECCCCEEECEEECCCCCCCCC------CCCCEEECCCCCCCCCCCE
T ss_conf 7999769------985667527418993378799089986745360688851026------6320340157668643220
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCEEEEECCCCEEEECCCCCEEEEEECCC
Q ss_conf 88754343210112223456676521001210000101002012478733771147870697061034441257630456
Q gi|254780524|r 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 (480)
Q Consensus 163 ~n~~~~~~~~~n~~~~~~~~~~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~ 242 (480)
T Consensus 150 ~----~~~~nl~a~~~~~------~~~~~~~~~~~------------~~~~~~~~~vyDs~G~--------~~~v~~~f~ 199 (398)
T PRK06803 150 L----DFVANLDASVTDP------SVSPFDPTDEK------------SYNSSTTSTVYDSLGN--------EHAVTQYFV 199 (398)
T ss_pred E----EEEEECCCCCCCC------CCCCCCCCCCC------------CEEEEEEEEEECCCCC--------CEEEEEEEE
T ss_conf 6----7886247766667------65656888776------------3001112899846897--------257899999
Q ss_pred CCCCCCCCEE-EECCCCCC-CCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6676643216-73365566-567766676531110111023313677878876554310012345577777765432112
Q gi|254780524|r 243 YTVTSESNPI-FIDGVVVS-SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 (480)
Q Consensus 243 ~~~~~~~~~~-~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (480)
T Consensus 200 kt~~n~w~~~~~~~~~~~~~~~~l~F~~~G~l~~~~~~-------------~~------~~~------------------ 242 (398)
T PRK06803 200 KTATNEWAVHYTVDGGDVTPPLTLQFDDTGALIPGKGS-------------TI------NLH------------------ 242 (398)
T ss_pred ECCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCC-------------CE------ECC------------------
T ss_conf 65897168999757875577447898788846457764-------------20------014------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 23456666543322222233333466621000245666655556665443102456766420111123333456776528
Q gi|254780524|r 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 (480)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 400 (480)
T Consensus 243 -~~~~~~g~~~~~i~l~~~~~tq~~~~~~~~~~~qdG~~~G~l~~~~I~~dG~I~~~ysNG~~~~lgqIala~F~Np~gL 321 (398)
T PRK06803 243 -DTFNPAGASDYDIDIDYTGSTQYAADFNNSRNKSDGYTSGELNGVRIEDNGMVYATYTNGQEQLQGQVVLANFANPNGL 321 (398)
T ss_pred -CCCCCCCCCCEEEEECCCCCEEECCCCCCEECCCCCEEEEEEEEEEECCCCEEEEEECCCCEEEEEEEEEEEECCHHHC
T ss_conf -4457787664358864776357436654100146875543232379888986999954874367768989973383655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999877788766421112322345679999999887662888899999999999999999999999999999998740
Q gi|254780524|r 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 (480)
Q Consensus 401 ~~~~~~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~ 479 (480)
T Consensus 322 ~~~G~n~--f~~T~~SG~~~~g~~g~~g~G~i~~gaLE~SNVDla~Eft~mI~tQR~yqANskvItT~DemlqelvN~v 398 (398)
T PRK06803 322 VTVSNTA--WSASNKSGQAILGTPGTGTLGSLTSGALEGSNVDITAELVGLMTAQRNYQANAKVISTNDTMQQALFNAI 398 (398)
T ss_pred CCCCCCE--EECCCCCCCCEECCCCCCCCCEEEECCEEHHHCHHHHHHHHHHHHHHHHHHHCEEEEEHHHHHHHHHHHC
T ss_conf 0047945--8643467886765799888512832746313140999999999998763564248874899999997409