HHsearch alignment for GI: 254780524 and conserved domain: PRK08471

>PRK08471 flgK flagellar hook-associated protein FlgK; Validated.
Probab=100.00  E-value=0  Score=408.34  Aligned_cols=475  Identities=18%  Similarity=0.234  Sum_probs=330.6

Q ss_pred             CC-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE----------CCCCEEEEEEEEEHHHHHHHHHHH
Q ss_conf             91-3588999999999999986787442025789981267999860----------466069989987206887888775
Q gi|254780524|r    1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVTQRSENKNMFDKVLHA   69 (480)
Q Consensus         1 Ms-l~~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~----------~~~g~~~~~~~~~~~~~~~~~~~~   69 (480)
T Consensus         1 M~s~fs~Lnia~sGL~a~Q~aL~vtg~NIANanT~GYsRQ~v~~~~~~~~~~~~g~~G~GV~v~~I~R~~D~fl~~q~r~   80 (612)
T PRK08471          1 MGGIFSSLNTGYTGLQAHQVQVSVTGNNISNASSEFYTRQRVVQTAQTALNTGPGNVGTGTQIETIVRIHDEFVYSRYKK   80 (612)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECHHHHHHHHHHH
T ss_conf             97056589999999999999999986767407899815016774044661257886556779766987035799999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf             44455678878789988865126777776401136677766876413867530011221012222221000224565665
Q gi|254780524|r   70 HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIR  149 (480)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (480)
T Consensus        81 ~~s~~~~~~~~~~~l~~le~l~~~~-~~~gl~~~l~~ff~a~q~la~~P~s~~~R~~vl~~a~~L~~~~n~~~~~l~~~~  159 (612)
T PRK08471         81 ASTELEYTDYEFSTLQEASAYFPDL-DGTGLLKDLQDYFNAWNDFASNPDESAQKQALAKKTETLTNNINDTRARLYTLQ  159 (612)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999889999999999999870898-877489999999999999986889989999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHCCEEEEEEEECC--------------
Q ss_conf             432000111278788754343210112223456--6765210012100001010020124787337--------------
Q gi|254780524|r  150 ADADKEIELEISNLRRFLSELTVVNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRN--------------  213 (480)
Q Consensus       150 ~~~~~~~~~~v~~~n~~~~~~~~~n~~~~~~~~--~~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~--------------  213 (480)
T Consensus       160 ~~~n~~i~~~V~~iN~l~~~Ia~LN~qI~~~~~~~~~~~andLlDqRD~ll~~LS~lv~i~v~~~~~~~~~~~~~~~~~~  239 (612)
T PRK08471        160 KKVNEELKVTVDEVNSLGKQIAEINKQIQEVEAGKTLKHANELRDKRDELELTLSKLVGANVFKSSIKSNSRIDTTIADF  239 (612)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCEEEEECCCCCCEECCCEEECC
T ss_conf             99999999999999999999999999999854578889825678899999999987629478842666520003301037


Q ss_pred             CCEEEEECCCCEEEECCCC-CEEEEEECCCCCCCCCCCEEEE-CCCCCCCCCCCCCCCCCCCCCHHHC-----------C
Q ss_conf             7114787069706103444-1257630456667664321673-3655665677666765311101110-----------2
Q gi|254780524|r  214 NNDMVVYTSDGTTLFETVP-RDINFEKMNSYTVTSESNPIFI-DGVVVSSNQGSAVPKGKIKALLQIR-----------D  280 (480)
Q Consensus       214 ~~~~~v~~~~g~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~-----------~  280 (480)
T Consensus       240 ~~~~~~~~-gG~~lv~g~~~~~l~~~~~~~--~~~-~~~i~~~~~~~~~~~~~~~~~~G~lg~~~~~r~~~~~~~~~~~~  315 (612)
T PRK08471        240 GESYNLNI-GGFNIVDGVNFHPLVLKSSDN--KGG-LYQIYYERDDFKVIDITDKINGGKVGALLDLRGRYNGGSGGTLD  315 (612)
T ss_pred             CCEEEEEE-CCEEECCCCCCCEEEEECCCC--CCC-CEEEEEECCCCCEECCCCCCCCCEEEEHHHHHCCCCCCCCCCCC
T ss_conf             86289976-887502477422047623788--886-13899845887420045656786010021210232443222221


Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-----------------------CCCCCCCCCCCCC-
Q ss_conf             3313677878876554310012345577777765432112234-----------------------5666654332222-
Q gi|254780524|r  281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI-----------------------KDLDNKLCQGISE-  336 (480)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~-  336 (480)
T Consensus       316 ~~~~~~~~~ld~~a~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~  395 (612)
T PRK08471        316 GKIQDYIDLLDTFAKTLIESTNNIYASSASHSITSDPLSLNSDEPLVNSNYNIKNGSFDIVIYDTDGKEIARKTINIDPI  395 (612)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEECCCCC
T ss_conf             03899999998999999997657653245445667753346775444567555667531377448765023330103665


Q ss_pred             --------CC--------------------CCC----CC--------CCCCCCC-----CCCCCCC--------------
Q ss_conf             --------22--------------------333----33--------4666210-----0024566--------------
Q gi|254780524|r  337 --------TI--------------------CVN----PQ--------YRSNPSF-----LRDGGSV--------------  357 (480)
Q Consensus       337 --------~~--------------------~~~----~~--------~~~~~~~-----~~~~~~~--------------  357 (480)
T Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~  475 (612)
T PRK08471        396 TTMNDIVQQINANTDDNNDNNANNDVDDYFTASFNYDTKTGDGLFVIQPKNASQGYFVSIEDNGTNFAGALGLNRFFDGD  475 (612)
T ss_pred             CCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf             33034666512566666665434443310100113566667651342356777751688606886544534555544677


Q ss_pred             -CCCCCCC-------------CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             -6655556-------------66544310245676642011112333345677652899998777887664211123223
Q gi|254780524|r  358 -SKKFLWN-------------VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM  423 (480)
Q Consensus       358 -~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~t~~sg~~~~~~  423 (480)
T Consensus       476 ~a~~i~v~~~~~~d~~~i~~~~~~~~gdn~~a~~l~~l~~~~~~~~~~~~~~~~~T~~~~y~~lvs~vG~~~~~a~~~~~  555 (612)
T PRK08471        476 DASNIKLNKEYKKDPTTIRAWLAPVNGNNDVANKMIQLQYDKVNFYNNKGTIKNETIEEYYRFLTGKIASDTEKNNRIND  555 (612)
T ss_pred             CCCCEEECCHHCCCHHHHCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             63313422120268576304578888961899999974106522004777767864999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             456799999998876628888999999999999999999999999999999987409
Q gi|254780524|r  424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK  480 (480)
Q Consensus       424 ~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R  480 (480)
T Consensus       556 ~~~~~~~~~~~~r~svSGVnlDEE~~nLik~QqaY~AsArvista~em~dtLL~i~~  612 (612)
T PRK08471        556 TNKSLLNSVKKEYQSISGVSTDEELTNLIKFQSSYGAAAKIITTVDQMLDTLLGIKQ  612 (612)
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             999999999999985106039999999999999999999999999999999982449