HHsearch alignment for GI: 254780524 and conserved domain: PRK08471
>PRK08471 flgK flagellar hook-associated protein FlgK; Validated.
Probab=100.00 E-value=0 Score=408.34 Aligned_cols=475 Identities=18% Similarity=0.234 Sum_probs=330.6
Q ss_pred CC-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE----------CCCCEEEEEEEEEHHHHHHHHHHH
Q ss_conf 91-3588999999999999986787442025789981267999860----------466069989987206887888775
Q gi|254780524|r 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVTQRSENKNMFDKVLHA 69 (480)
Q Consensus 1 Ms-l~~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~----------~~~g~~~~~~~~~~~~~~~~~~~~ 69 (480)
T Consensus 1 M~s~fs~Lnia~sGL~a~Q~aL~vtg~NIANanT~GYsRQ~v~~~~~~~~~~~~g~~G~GV~v~~I~R~~D~fl~~q~r~ 80 (612)
T PRK08471 1 MGGIFSSLNTGYTGLQAHQVQVSVTGNNISNASSEFYTRQRVVQTAQTALNTGPGNVGTGTQIETIVRIHDEFVYSRYKK 80 (612)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECHHHHHHHHHHH
T ss_conf 97056589999999999999999986767407899815016774044661257886556779766987035799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 44455678878789988865126777776401136677766876413867530011221012222221000224565665
Q gi|254780524|r 70 HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIR 149 (480)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (480)
T Consensus 81 ~~s~~~~~~~~~~~l~~le~l~~~~-~~~gl~~~l~~ff~a~q~la~~P~s~~~R~~vl~~a~~L~~~~n~~~~~l~~~~ 159 (612)
T PRK08471 81 ASTELEYTDYEFSTLQEASAYFPDL-DGTGLLKDLQDYFNAWNDFASNPDESAQKQALAKKTETLTNNINDTRARLYTLQ 159 (612)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999889999999999999870898-877489999999999999986889989999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHCCEEEEEEEECC--------------
Q ss_conf 432000111278788754343210112223456--6765210012100001010020124787337--------------
Q gi|254780524|r 150 ADADKEIELEISNLRRFLSELTVVNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRN-------------- 213 (480)
Q Consensus 150 ~~~~~~~~~~v~~~n~~~~~~~~~n~~~~~~~~--~~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~-------------- 213 (480)
T Consensus 160 ~~~n~~i~~~V~~iN~l~~~Ia~LN~qI~~~~~~~~~~~andLlDqRD~ll~~LS~lv~i~v~~~~~~~~~~~~~~~~~~ 239 (612)
T PRK08471 160 KKVNEELKVTVDEVNSLGKQIAEINKQIQEVEAGKTLKHANELRDKRDELELTLSKLVGANVFKSSIKSNSRIDTTIADF 239 (612)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCEEEEECCCCCCEECCCEEECC
T ss_conf 99999999999999999999999999999854578889825678899999999987629478842666520003301037
Q ss_pred CCEEEEECCCCEEEECCCC-CEEEEEECCCCCCCCCCCEEEE-CCCCCCCCCCCCCCCCCCCCCHHHC-----------C
Q ss_conf 7114787069706103444-1257630456667664321673-3655665677666765311101110-----------2
Q gi|254780524|r 214 NNDMVVYTSDGTTLFETVP-RDINFEKMNSYTVTSESNPIFI-DGVVVSSNQGSAVPKGKIKALLQIR-----------D 280 (480)
Q Consensus 214 ~~~~~v~~~~g~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~-----------~ 280 (480)
T Consensus 240 ~~~~~~~~-gG~~lv~g~~~~~l~~~~~~~--~~~-~~~i~~~~~~~~~~~~~~~~~~G~lg~~~~~r~~~~~~~~~~~~ 315 (612)
T PRK08471 240 GESYNLNI-GGFNIVDGVNFHPLVLKSSDN--KGG-LYQIYYERDDFKVIDITDKINGGKVGALLDLRGRYNGGSGGTLD 315 (612)
T ss_pred CCEEEEEE-CCEEECCCCCCCEEEEECCCC--CCC-CEEEEEECCCCCEECCCCCCCCCEEEEHHHHHCCCCCCCCCCCC
T ss_conf 86289976-887502477422047623788--886-13899845887420045656786010021210232443222221
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-----------------------CCCCCCCCCCCCC-
Q ss_conf 3313677878876554310012345577777765432112234-----------------------5666654332222-
Q gi|254780524|r 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI-----------------------KDLDNKLCQGISE- 336 (480)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~- 336 (480)
T Consensus 316 ~~~~~~~~~ld~~a~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~ 395 (612)
T PRK08471 316 GKIQDYIDLLDTFAKTLIESTNNIYASSASHSITSDPLSLNSDEPLVNSNYNIKNGSFDIVIYDTDGKEIARKTINIDPI 395 (612)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEECCCCC
T ss_conf 03899999998999999997657653245445667753346775444567555667531377448765023330103665
Q ss_pred --------CC--------------------CCC----CC--------CCCCCCC-----CCCCCCC--------------
Q ss_conf --------22--------------------333----33--------4666210-----0024566--------------
Q gi|254780524|r 337 --------TI--------------------CVN----PQ--------YRSNPSF-----LRDGGSV-------------- 357 (480)
Q Consensus 337 --------~~--------------------~~~----~~--------~~~~~~~-----~~~~~~~-------------- 357 (480)
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~ 475 (612)
T PRK08471 396 TTMNDIVQQINANTDDNNDNNANNDVDDYFTASFNYDTKTGDGLFVIQPKNASQGYFVSIEDNGTNFAGALGLNRFFDGD 475 (612)
T ss_pred CCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 33034666512566666665434443310100113566667651342356777751688606886544534555544677
Q ss_pred -CCCCCCC-------------CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -6655556-------------66544310245676642011112333345677652899998777887664211123223
Q gi|254780524|r 358 -SKKFLWN-------------VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423 (480)
Q Consensus 358 -~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~t~~sg~~~~~~ 423 (480)
T Consensus 476 ~a~~i~v~~~~~~d~~~i~~~~~~~~gdn~~a~~l~~l~~~~~~~~~~~~~~~~~T~~~~y~~lvs~vG~~~~~a~~~~~ 555 (612)
T PRK08471 476 DASNIKLNKEYKKDPTTIRAWLAPVNGNNDVANKMIQLQYDKVNFYNNKGTIKNETIEEYYRFLTGKIASDTEKNNRIND 555 (612)
T ss_pred CCCCEEECCHHCCCHHHHCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 63313422120268576304578888961899999974106522004777767864999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 456799999998876628888999999999999999999999999999999987409
Q gi|254780524|r 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 424 ~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
T Consensus 556 ~~~~~~~~~~~~r~svSGVnlDEE~~nLik~QqaY~AsArvista~em~dtLL~i~~ 612 (612)
T PRK08471 556 TNKSLLNSVKKEYQSISGVSTDEELTNLIKFQSSYGAAAKIITTVDQMLDTLLGIKQ 612 (612)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999985106039999999999999999999999999999999982449