HHsearch alignment for GI: 254780524 and conserved domain: PRK12630
>PRK12630 flgC flagellar basal body rod protein FlgC; Provisional.
Probab=98.80 E-value=7.5e-09 Score=71.49 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC------CCEEEEEEEEE
Q ss_conf 9135889999999999999867874420257899------81267999860
Q gi|254780524|r 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTI 45 (480)
Q Consensus 1 Msl~~sl~~~~SGL~a~q~~ldvisnNIANvnT~------Gyk~~~~~f~~ 45 (480)
T Consensus 1 M~~~~~~~Ia~sgl~Aqr~Rl~~ia~NiANa~tt~~~~g~pYrrk~~vf~~ 51 (143)
T PRK12630 1 MKAFDSMRISASGLSAERLRMDTIASNISNASTTRTANGGPYRRKIAVFQE 51 (143)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 972557869999999999999999987653588899999866444112547