HHsearch alignment for GI: 254780524 and conserved domain: PRK12631
>PRK12631 flgC flagellar basal body rod protein FlgC; Provisional.
Probab=98.89 E-value=2.4e-09 Score=74.59 Aligned_cols=45 Identities=31% Similarity=0.430 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC------CCCEEEEEEEEE
Q ss_conf 913588999999999999986787442025789------981267999860
Q gi|254780524|r 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN------KNYVRRDTMTTI 45 (480)
Q Consensus 1 Msl~~sl~~~~SGL~a~q~~ldvisnNIANvnT------~Gyk~~~~~f~~ 45 (480)
T Consensus 1 Ms~~~~~~Ia~sgl~Aqr~Rm~via~NiANa~tt~~~~g~~Yr~k~~vf~~ 51 (138)
T PRK12631 1 MSLFNIFDVAGSGMSAQSVRLNTTASNIANADSVSSSVDKTYRARHPIFEA 51 (138)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEHHH
T ss_conf 962667869999999999999999987763476788999987312211135