HHsearch alignment for GI: 254780524 and conserved domain: PRK12637
>PRK12637 flgE flagellar hook protein FlgE; Provisional.
Probab=100.00 E-value=0 Score=367.87 Aligned_cols=437 Identities=15% Similarity=0.078 Sum_probs=216.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEC------CCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999867874420257899812679998604------660699899872068878887754445567887
Q gi|254780524|r 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRL 79 (480)
Q Consensus 6 sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (480)
T Consensus 2 ~~~~GvsGl~a~~~~l~vi~nNiAN~~T~gfK~~~~~F~~~~~~~~~g~g~~~~~~~---~~~~~G~~~~t~~~~d~ai~ 78 (473)
T PRK12637 2 GFGQGLSGLNAASQNLDVIGNNIANSGTVGFKSGAASFADVYASSRVGLGVKVSAIN---QRFTVGNISTTGGEYDMAID 78 (473)
T ss_pred CHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCEEEEEEE---EEECCCCEEECCCCCEEEEE
T ss_conf 377899999998855325514767377600085667166754558766734764789---88256780667983438894
Q ss_pred -HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf -8789988865126777776401136677766876413867530011221012222221000224565665432000111
Q gi|254780524|r 80 -LQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 (480)
Q Consensus 80 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (480)
T Consensus 79 ~g~GfF~v~~~------~~~~~yTR~G~F~~d~~g~lv~~~G~~lqG~~~~~~g~~~~~i----------~l~~~~-~~p 141 (473)
T PRK12637 79 GGKGFFRLTDQ------SGGVFYSRNGEFMVDKNFYIVNAQGFRLTGYPAGGVGAQPVDL----------QLPQGN-IAP 141 (473)
T ss_pred CCCEEEEEECC------CCCEEEECCCCEEECCCCEEECCCCCEEECCCCCCCCCCEEEE----------ECCCCC-CCC
T ss_conf 69707999738------9966774364266879970985899887764467788740113----------546777-587
Q ss_pred HH-HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC---CEEEEEEEECCC-----CEEEEECCCCEEEEC
Q ss_conf 27-878875434321011222345667652100121000010100---201247873377-----114787069706103
Q gi|254780524|r 159 EI-SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS---EIIGISTIVRNN-----NDMVVYTSDGTTLFE 229 (480)
Q Consensus 159 ~v-~~~n~~~~~~~~~n~~~~~~~~~~~~~~~~~d~~~~~~~~~s---~~~~~~~~~~~~-----~~~~v~~~~g~~l~~ 229 (480)
T Consensus 142 ~aTt~~----~~~~NL~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~d 215 (473)
T PRK12637 142 QATSTA----GLQTNLNANAKVIDPNDTPAVDGTVELDGTTYRFTNAGGTFAWVAPAPLDGTYNGGDIVI--AGGAVTGD 215 (473)
T ss_pred CCCEEE----EEEEECCCCCCCCCCCCCCCCCCCEECCCCEEEEECCCCCEEEECCCCCCCCCCCCCEEE--CCCCCCCC
T ss_conf 432058----788840677644477666454650101451257623676022201233356434552022--05520133
Q ss_pred CC--C---------CEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCC---C-CCC--CCCCHHHCCCCCHHHHHHHHH
Q ss_conf 44--4---------12576304566676643216733655665677666---7-653--111011102331367787887
Q gi|254780524|r 230 TV--P---------RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV---P-KGK--IKALLQIRDSVVPIFQNQLDE 292 (480)
Q Consensus 230 ~~--~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~g~--~~~~~~~~~~~~~~~~~~~~~ 292 (480)
T Consensus 216 ~~~~~~~~~~~~~~~~~~~d~t~~~~~~~~~~~~v~ds~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~-------~ 288 (473)
T PRK12637 216 LASQPGYQPYKPLVAGIPFDPTNPLSYTDQVPTTVYDSLGNSHQMIQYFAKRPAVGTESVYEVYYVLDGQPM-------Q 288 (473)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCC-------C
T ss_conf 235666544332123565687777531344306988268982578999861467787743689995378731-------2
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCC-CCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 65543100123455777777654-3211-223456666543322222233333466621000245666655556665443
Q gi|254780524|r 293 MARVLIGSFSEKDPIAGNSENVP-GLFI-ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAG 370 (480)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (480)
T Consensus 289 ~~~~-~~~tl~fd~~g~l~~~~~~~~~t~~~~~~~~~~~~~~~it~~~~g~Tq~~s~~~-~~~~qdG~~~G~L~~~~Id~ 366 (473)
T PRK12637 289 VNGG-ASQTLNFDTAGNLLNQPPTAQVTFANPGGNAAPADPLAITVSYNGVTQYGSDFA-PKVVQNGYSSGEFMGLSVGK 366 (473)
T ss_pred CCCC-CCEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEECCCCEEEECCCCC-CEECCCCCCCCEEEEEEECC
T ss_conf 3577-630588658885147887421576257877676776048872665167546665-12302784454156889899
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 10245676642011112333345677652899998777887664211123223456799999998876628888999999
Q gi|254780524|r 371 YPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450 (480)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tn 450 (480)
T Consensus 367 dG~I~g~ySNG~t~~l~qIaLA~F~Np~GL~~~G~n~--y~~T~~SG~~~~g~ag~gg~G~I~~gaLE~SNVDLa~Eft~ 444 (473)
T PRK12637 367 DGSLVAKYTNGETQTIGTLVLANFNNVQGLQPVGNNA--WVETSESGQATLGQPGTNGLATIAGQALEASNVDMSRELVN 444 (473)
T ss_pred CCEEEEEECCCCEEEEEEEEEEEECCHHHCEECCCCE--EECCCCCCCCEECCCCCCCCCEEEECCEEHHHHHHHHHHHH
T ss_conf 9489999879959898899999616958660137963--87201378855757998886217217540244079999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999998740
Q gi|254780524|r 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 (480)
Q Consensus 451 LI~~QraYqANakvItT~Demlq~Lin~~ 479 (480)
T Consensus 445 mIvtQR~yQANSKvItTsDemLqelinLK 473 (473)
T PRK12637 445 MIVAQRTYQANAQTIKTQDEVMQVLMNMR 473 (473)
T ss_pred HHHHHHHHHHHCEEEEEHHHHHHHHHHCC
T ss_conf 99987650143258875899999997059