HHsearch alignment for GI: 254780524 and conserved domain: PRK12643
>PRK12643 flgF flagellar basal body rod protein FlgF; Reviewed.
Probab=99.40 E-value=4.6e-15 Score=109.81 Aligned_cols=107 Identities=9% Similarity=0.049 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCEE-----E-EEEEEEHHHHHHHHHHHHHHHHHH
Q ss_conf 3588999999999999986787442025789981267999860466069-----9-899872068878887754445567
Q gi|254780524|r 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-----V-VTQRSENKNMFDKVLHAHSSAIGQ 76 (480)
Q Consensus 3 l~~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~~~~g~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~ 76 (480)
T Consensus 1 Mdr~iYtA~sg~~~~~~~~~viaNNLANvnT~GFK~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~qG~l~~Tg~~LDl 80 (209)
T PRK12643 1 MDHAIYTAMGAARQSLELQAVTANNLANASTPGFRAQLAAMRAVPIDGPSLATRTMVTTSTPGVDISQGTMNFSGRPLDV 80 (209)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHCCCCCCCCCCCCCEEEECCCCEECCCCCEEECCCCEEE
T ss_conf 92689999999999999888998887747876443104534231224777653311330465046167573515983039
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 887878998886512677777640113667776687641
Q gi|254780524|r 77 QRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 (480)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (480)
T Consensus 81 AI~G~GfF~V~~~------~G~~aYTR~G~f~vd~~G~L 113 (209)
T PRK12643 81 ALQQDGYLAVQLP------DGSEAYTRNGNIQISANGQM 113 (209)
T ss_pred EEECCCEEEEECC------CCCEEEEECCCEEECCCCCE
T ss_conf 9808958999858------99567887887159999879