HHsearch alignment for GI: 254780524 and conserved domain: PRK12643

>PRK12643 flgF flagellar basal body rod protein FlgF; Reviewed.
Probab=99.40  E-value=4.6e-15  Score=109.81  Aligned_cols=107  Identities=9%  Similarity=0.049  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCEE-----E-EEEEEEHHHHHHHHHHHHHHHHHH
Q ss_conf             3588999999999999986787442025789981267999860466069-----9-899872068878887754445567
Q gi|254780524|r    3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-----V-VTQRSENKNMFDKVLHAHSSAIGQ   76 (480)
Q Consensus         3 l~~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~~~~g~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~   76 (480)
T Consensus         1 Mdr~iYtA~sg~~~~~~~~~viaNNLANvnT~GFK~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~qG~l~~Tg~~LDl   80 (209)
T PRK12643          1 MDHAIYTAMGAARQSLELQAVTANNLANASTPGFRAQLAAMRAVPIDGPSLATRTMVTTSTPGVDISQGTMNFSGRPLDV   80 (209)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHCCCCCCCCCCCCCEEEECCCCEECCCCCEEECCCCEEE
T ss_conf             92689999999999999888998887747876443104534231224777653311330465046167573515983039


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             887878998886512677777640113667776687641
Q gi|254780524|r   77 QRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS  115 (480)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (480)
T Consensus        81 AI~G~GfF~V~~~------~G~~aYTR~G~f~vd~~G~L  113 (209)
T PRK12643         81 ALQQDGYLAVQLP------DGSEAYTRNGNIQISANGQM  113 (209)
T ss_pred             EEECCCEEEEECC------CCCEEEEECCCEEECCCCCE
T ss_conf             9808958999858------99567887887159999879