HHsearch alignment for GI: 254780524 and conserved domain: PRK12715

>PRK12715 flgK flagellar hook-associated protein FlgK; Provisional.
Probab=100.00  E-value=0  Score=398.21  Aligned_cols=469  Identities=15%  Similarity=0.152  Sum_probs=345.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE----------CCCCEEEEEEEEEHHHHHHHHHHHHHHHH
Q ss_conf             88999999999999986787442025789981267999860----------46606998998720688788877544455
Q gi|254780524|r    5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVTQRSENKNMFDKVLHAHSSAI   74 (480)
Q Consensus         5 ~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   74 (480)
T Consensus         2 sllnig~sgL~a~Q~al~vt~~NIAN~nT~GYsRq~v~~~~~~~~~~~~~~~G~Gv~v~~i~R~~d~fl~~~~~~~~s~~   81 (649)
T PRK12715          2 SILNIAYSGLNAFQRALDVTGNNIANFKTRGYSRQSIQFTPIASNRYAGSYIGAGVSVSSIYRNVDQFANAQVRSTLSYR   81 (649)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_conf             76889999999999999887052552689980414666422467666787310688975799846389999999997778


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             67887878998886512677777640113667776687641386753001122101222222100022456566543200
Q gi|254780524|r   75 GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK  154 (480)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (480)
T Consensus        82 ~~~~~~~~~~~~le~~~~~--~~~~l~~~l~~ff~a~~~la~~P~~~~~R~~vl~~a~~l~~~~n~~~~~l~~~~~~~~~  159 (649)
T PRK12715         82 TQYDAFYNQAIQIDKLLSQ--DGSSISVPLQTFFDSIGQLNSTPDNIATRGVVLKQSQLLAQQFNSLQIKLEEYERNSTL  159 (649)
T ss_pred             HHHHHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8999999999999976178--98627899999999999998588887899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCEEEEECCCCEEEECCCCCE
Q ss_conf             01112787887543432101122234566765210012100001010020124787337711478706970610344412
Q gi|254780524|r  155 EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD  234 (480)
Q Consensus       155 ~~~~~v~~~n~~~~~~~~~n~~~~~~~~~~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~~g~~l~~~~~~~  234 (480)
T Consensus       160 ~i~~~v~~iN~l~~~Ia~LN~~I~----~~~~~~dLlDqRD~li~eLS~lv~v~v~~~~~G~v~V~~~~G~~LV~g~~~~  235 (649)
T PRK12715        160 QVTESVKIINRITKELAEVNGKLL----GNNNIPELLDHRDELLKQLSGYTDLSIFDQGDGTISVGIASGDMLVAGTQQR  235 (649)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----CCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEECCCCEEEECCCEE
T ss_conf             999999999999999999999974----5899468899999999999865195999869970899957984355457404


Q ss_pred             EEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             57630456667664321673365566567766676531110111023313677878876554310012345577777765
Q gi|254780524|r  235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV  314 (480)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (480)
T Consensus       236 ~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~lggll~~r~~~l~~~~~~l~~la~~la~~~N~~h~~G~dl~g~  314 (649)
T PRK12715        236 DL-VVGTGKDSIFGTRIFLSSGGNNQVDITDRLTTGMLGGLIDYEKNVLGQASQLIGQMAIGLAQTFNTQHKLGMDMNSQ  314 (649)
T ss_pred             EE-EECCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCEEEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             78-84058888666248993289860103555467532034420111128889988789998876543565516677776


Q ss_pred             CCCCCCCCCCCC-----------CCCCCC------------------------------------CCCCCCC--------
Q ss_conf             432112234566-----------665433------------------------------------2222223--------
Q gi|254780524|r  315 PGLFIADGIKDL-----------DNKLCQ------------------------------------GISETIC--------  339 (480)
Q Consensus       315 ~~~~~~~~~~~~-----------~~~~~~------------------------------------~~~~~~~--------  339 (480)
T Consensus       315 ~G~~~F~d~n~~~~~~~~~~~~~~n~~~~~~~~~i~~~~~~~~~d~~l~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~  394 (649)
T PRK12715        315 IGKDFFTDFNSPGQMLKRSTASADNSGTAVLSVNISDISQVKLSDYDLIISDTGANELRLIRKSDGTSTTLTWSSSPPAP  394 (649)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEECCCCCCCC
T ss_conf             56542135776420001232356777640588885125544456641688306875179986278743554125777777


Q ss_pred             ---------------CCCC-CCCCCCCCCCCCCC--------------------C-CCC-------------CCCCCCC-
Q ss_conf             ---------------3333-46662100024566--------------------6-655-------------5566654-
Q gi|254780524|r  340 ---------------VNPQ-YRSNPSFLRDGGSV--------------------S-KKF-------------LWNVKNL-  368 (480)
Q Consensus       340 ---------------~~~~-~~~~~~~~~~~~~~--------------------~-~~~-------------~~~~~~~-  368 (480)
T Consensus       395 ~~g~~~~~g~t~~~~~~~~~~~~d~~~~~pt~~~a~~~~~~~~d~~~~a~as~~~~~~~~~n~g~g~~~~~~~~~~~~~~  474 (649)
T PRK12715        395 PAGQVVIDGMTITVNDLSQLANNDHYTLTPTRGAARDFALEIKDAYEIALASPVKTTASLNNTGQGQIILGPVLNTASVN  474 (649)
T ss_pred             CCCEEEECCEEEEECCCCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
T ss_conf             76503316647870564223567715761356655442476058777542285211002357776315422422355556


Q ss_pred             ----------C-------CCHH----------------------------------------------HHHHHHHHHCCC
Q ss_conf             ----------4-------3102----------------------------------------------456766420111
Q gi|254780524|r  369 ----------A-------GYPD----------------------------------------------LINHYCDSFNKN  385 (480)
Q Consensus       369 ----------~-------~~~~----------------------------------------------~~~~~~~~~~~~  385 (480)
T Consensus       475 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sg~p~~gd~ft~~~~~~~~gDN~nal~la  554 (649)
T PRK12715        475 KQFRIDFISDTQYNLVNVTDSTTAGPFAFVPNTNNVIQIPDGITPSYSVVLSGIPKSGDQFTTDYNTGGFGDNRNGLILG  554 (649)
T ss_pred             CCEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCHHHHHHHH
T ss_conf             53255312577642353157776665300478775200367778774166437657787355137888878669999999


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             12333345677652899998777887664211123223456799999998876628888999999999999999999999
Q gi|254780524|r  386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI  465 (480)
Q Consensus       386 ~~~~~~~~~~~~~~l~~~~~~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvI  465 (480)
T Consensus       555 ~Lq~~~~~~~g~~T~~d~Y~~lvs~vG~~t~~A~~~~~~~~~l~~q~~~~r~SvSGVNLDEE~aNLi~fQqaY~AsArvI  634 (649)
T PRK12715        555 NIQQNKIFSNGSETLFDRYGSLLAEVGGRTNQAKTSFESADILHKQALDFQDSKSGVNLDEEGANLLVFQQAYQAAGKLM  634 (649)
T ss_pred             HHCCCEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             63246010589656999999999999999999999899999999999999860315168899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHC
Q ss_conf             999999999987409
Q gi|254780524|r  466 MFTDKMLQTLLEGVK  480 (480)
Q Consensus       466 tT~Demlq~Lin~~R  480 (480)
T Consensus       635 sta~emfDtLLn~vR  649 (649)
T PRK12715        635 EISNQIMNLLFDIMR  649 (649)
T ss_pred             HHHHHHHHHHHHHCC
T ss_conf             999999999998539