HHsearch alignment for GI: 254780524 and conserved domain: PRK12715
>PRK12715 flgK flagellar hook-associated protein FlgK; Provisional.
Probab=100.00 E-value=0 Score=398.21 Aligned_cols=469 Identities=15% Similarity=0.152 Sum_probs=345.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE----------CCCCEEEEEEEEEHHHHHHHHHHHHHHHH
Q ss_conf 88999999999999986787442025789981267999860----------46606998998720688788877544455
Q gi|254780524|r 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVTQRSENKNMFDKVLHAHSSAI 74 (480)
Q Consensus 5 ~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (480)
T Consensus 2 sllnig~sgL~a~Q~al~vt~~NIAN~nT~GYsRq~v~~~~~~~~~~~~~~~G~Gv~v~~i~R~~d~fl~~~~~~~~s~~ 81 (649)
T PRK12715 2 SILNIAYSGLNAFQRALDVTGNNIANFKTRGYSRQSIQFTPIASNRYAGSYIGAGVSVSSIYRNVDQFANAQVRSTLSYR 81 (649)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_conf 76889999999999999887052552689980414666422467666787310688975799846389999999997778
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 67887878998886512677777640113667776687641386753001122101222222100022456566543200
Q gi|254780524|r 75 GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154 (480)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (480)
T Consensus 82 ~~~~~~~~~~~~le~~~~~--~~~~l~~~l~~ff~a~~~la~~P~~~~~R~~vl~~a~~l~~~~n~~~~~l~~~~~~~~~ 159 (649)
T PRK12715 82 TQYDAFYNQAIQIDKLLSQ--DGSSISVPLQTFFDSIGQLNSTPDNIATRGVVLKQSQLLAQQFNSLQIKLEEYERNSTL 159 (649)
T ss_pred HHHHHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999976178--98627899999999999998588887899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCEEEEECCCCEEEECCCCCE
Q ss_conf 01112787887543432101122234566765210012100001010020124787337711478706970610344412
Q gi|254780524|r 155 EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 (480)
Q Consensus 155 ~~~~~v~~~n~~~~~~~~~n~~~~~~~~~~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~~g~~l~~~~~~~ 234 (480)
T Consensus 160 ~i~~~v~~iN~l~~~Ia~LN~~I~----~~~~~~dLlDqRD~li~eLS~lv~v~v~~~~~G~v~V~~~~G~~LV~g~~~~ 235 (649)
T PRK12715 160 QVTESVKIINRITKELAEVNGKLL----GNNNIPELLDHRDELLKQLSGYTDLSIFDQGDGTISVGIASGDMLVAGTQQR 235 (649)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----CCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEECCCCEEEECCCEE
T ss_conf 999999999999999999999974----5899468899999999999865195999869970899957984355457404
Q ss_pred EEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 57630456667664321673365566567766676531110111023313677878876554310012345577777765
Q gi|254780524|r 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314 (480)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (480)
T Consensus 236 ~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~lggll~~r~~~l~~~~~~l~~la~~la~~~N~~h~~G~dl~g~ 314 (649)
T PRK12715 236 DL-VVGTGKDSIFGTRIFLSSGGNNQVDITDRLTTGMLGGLIDYEKNVLGQASQLIGQMAIGLAQTFNTQHKLGMDMNSQ 314 (649)
T ss_pred EE-EECCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCEEEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 78-84058888666248993289860103555467532034420111128889988789998876543565516677776
Q ss_pred CCCCCCCCCCCC-----------CCCCCC------------------------------------CCCCCCC--------
Q ss_conf 432112234566-----------665433------------------------------------2222223--------
Q gi|254780524|r 315 PGLFIADGIKDL-----------DNKLCQ------------------------------------GISETIC-------- 339 (480)
Q Consensus 315 ~~~~~~~~~~~~-----------~~~~~~------------------------------------~~~~~~~-------- 339 (480)
T Consensus 315 ~G~~~F~d~n~~~~~~~~~~~~~~n~~~~~~~~~i~~~~~~~~~d~~l~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~ 394 (649)
T PRK12715 315 IGKDFFTDFNSPGQMLKRSTASADNSGTAVLSVNISDISQVKLSDYDLIISDTGANELRLIRKSDGTSTTLTWSSSPPAP 394 (649)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEECCCCCCCC
T ss_conf 56542135776420001232356777640588885125544456641688306875179986278743554125777777
Q ss_pred ---------------CCCC-CCCCCCCCCCCCCC--------------------C-CCC-------------CCCCCCC-
Q ss_conf ---------------3333-46662100024566--------------------6-655-------------5566654-
Q gi|254780524|r 340 ---------------VNPQ-YRSNPSFLRDGGSV--------------------S-KKF-------------LWNVKNL- 368 (480)
Q Consensus 340 ---------------~~~~-~~~~~~~~~~~~~~--------------------~-~~~-------------~~~~~~~- 368 (480)
T Consensus 395 ~~g~~~~~g~t~~~~~~~~~~~~d~~~~~pt~~~a~~~~~~~~d~~~~a~as~~~~~~~~~n~g~g~~~~~~~~~~~~~~ 474 (649)
T PRK12715 395 PAGQVVIDGMTITVNDLSQLANNDHYTLTPTRGAARDFALEIKDAYEIALASPVKTTASLNNTGQGQIILGPVLNTASVN 474 (649)
T ss_pred CCCEEEECCEEEEECCCCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
T ss_conf 76503316647870564223567715761356655442476058777542285211002357776315422422355556
Q ss_pred ----------C-------CCHH----------------------------------------------HHHHHHHHHCCC
Q ss_conf ----------4-------3102----------------------------------------------456766420111
Q gi|254780524|r 369 ----------A-------GYPD----------------------------------------------LINHYCDSFNKN 385 (480)
Q Consensus 369 ----------~-------~~~~----------------------------------------------~~~~~~~~~~~~ 385 (480)
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sg~p~~gd~ft~~~~~~~~gDN~nal~la 554 (649)
T PRK12715 475 KQFRIDFISDTQYNLVNVTDSTTAGPFAFVPNTNNVIQIPDGITPSYSVVLSGIPKSGDQFTTDYNTGGFGDNRNGLILG 554 (649)
T ss_pred CCEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCHHHHHHHH
T ss_conf 53255312577642353157776665300478775200367778774166437657787355137888878669999999
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 12333345677652899998777887664211123223456799999998876628888999999999999999999999
Q gi|254780524|r 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 (480)
Q Consensus 386 ~~~~~~~~~~~~~~l~~~~~~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvI 465 (480)
T Consensus 555 ~Lq~~~~~~~g~~T~~d~Y~~lvs~vG~~t~~A~~~~~~~~~l~~q~~~~r~SvSGVNLDEE~aNLi~fQqaY~AsArvI 634 (649)
T PRK12715 555 NIQQNKIFSNGSETLFDRYGSLLAEVGGRTNQAKTSFESADILHKQALDFQDSKSGVNLDEEGANLLVFQQAYQAAGKLM 634 (649)
T ss_pred HHCCCEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 63246010589656999999999999999999999899999999999999860315168899999999999999999999
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 999999999987409
Q gi|254780524|r 466 MFTDKMLQTLLEGVK 480 (480)
Q Consensus 466 tT~Demlq~Lin~~R 480 (480)
T Consensus 635 sta~emfDtLLn~vR 649 (649)
T PRK12715 635 EISNQIMNLLFDIMR 649 (649)
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999998539