HHsearch alignment for GI: 254780524 and conserved domain: TIGR02489
>TIGR02489 flgE_epsilon flagellar hook protein FlgE; InterPro: IPR012835 Members of this family are flagellar hook proteins, designated FlgE, as found in the epsilon subdivision of the proteobacteria (Helicobacter, Wolinella, and Campylobacter). These proteins differ significantly in architecture from proteins designated FlgE in other lineages; the N-terminal and C-terminal domains are homologous, but members of this family only contain a large central domain that is surface-exposed and variable between strains.; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0044461 flagellin-based flagellum part.
Probab=100.00 E-value=7.8e-44 Score=287.30 Aligned_cols=110 Identities=18% Similarity=0.202 Sum_probs=98.2
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 43102456766420111123333456776528999987778876642111232234567999999988766288889999
Q gi|254780524|r 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 (480)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~ 448 (480)
T Consensus 768 D~~G~LlGeFsNGk~~alA~vA~As~aNN~GL~a~GgNl--f~~TaNSGepvVG~AgtGgRG~~~~SaLEMSNVDLSRsL 845 (877)
T TIGR02489 768 DSNGNLLGEFSNGKTLALAQVALASFANNSGLQAEGGNL--FSQTANSGEPVVGEAGTGGRGEVSTSALEMSNVDLSRSL 845 (877)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCCCHHHHCCCE--EEECCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 378747553038603687788877300543302126711--543134388206325888878604452100100466643
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999999999999987409
Q gi|254780524|r 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 449 tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
T Consensus 846 T~LIvvQRGfQANSKtvtTSDQiL~TLlqLKQ 877 (877)
T TIGR02489 846 TQLIVVQRGFQANSKTVTTSDQILNTLLQLKQ 877 (877)
T ss_pred HHEEEEECCEECCCCCCCHHHHHHHHHHHHCC
T ss_conf 01277651411456403015789999974059