HHsearch alignment for GI: 254780524 and conserved domain: TIGR02489

>TIGR02489 flgE_epsilon flagellar hook protein FlgE; InterPro: IPR012835 Members of this family are flagellar hook proteins, designated FlgE, as found in the epsilon subdivision of the proteobacteria (Helicobacter, Wolinella, and Campylobacter). These proteins differ significantly in architecture from proteins designated FlgE in other lineages; the N-terminal and C-terminal domains are homologous, but members of this family only contain a large central domain that is surface-exposed and variable between strains.; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0044461 flagellin-based flagellum part.
Probab=100.00  E-value=7.8e-44  Score=287.30  Aligned_cols=110  Identities=18%  Similarity=0.202  Sum_probs=98.2

Q ss_pred             CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf             43102456766420111123333456776528999987778876642111232234567999999988766288889999
Q gi|254780524|r  369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL  448 (480)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~  448 (480)
T Consensus       768 D~~G~LlGeFsNGk~~alA~vA~As~aNN~GL~a~GgNl--f~~TaNSGepvVG~AgtGgRG~~~~SaLEMSNVDLSRsL  845 (877)
T TIGR02489       768 DSNGNLLGEFSNGKTLALAQVALASFANNSGLQAEGGNL--FSQTANSGEPVVGEAGTGGRGEVSTSALEMSNVDLSRSL  845 (877)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCCCHHHHCCCE--EEECCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             378747553038603687788877300543302126711--543134388206325888878604452100100466643


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999999999999999999999987409
Q gi|254780524|r  449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK  480 (480)
Q Consensus       449 tnLI~~QraYqANakvItT~Demlq~Lin~~R  480 (480)
T Consensus       846 T~LIvvQRGfQANSKtvtTSDQiL~TLlqLKQ  877 (877)
T TIGR02489       846 TQLIVVQRGFQANSKTVTTSDQILNTLLQLKQ  877 (877)
T ss_pred             HHEEEEECCEECCCCCCCHHHHHHHHHHHHCC
T ss_conf             01277651411456403015789999974059