>TIGR03506 FlgEFG_subfam fagellar hook-basal body proteins. This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog HMMs, TIGR02489, TIGR02490 and TIGR00488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.

Probab=99.92 E-value=3.6e-29 Score=196.82 Aligned_cols=113 Identities=12% Similarity=0.040 Sum_probs=86.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECC-----------CCEEEEEEEEEHHHHHHHHHHHHHHH Q ss_conf 8899999999999998678744202578998126799986046-----------60699899872068878887754445 Q gi|254780524|r 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-----------ENVTVVTQRSENKNMFDKVLHAHSSA 73 (480) Q Consensus 5 ~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~~~-----------~g~~~~~~~~~~~~~~~~~~~~~~~~ 73 (480) T Consensus 1 ~sly~a~sgm~a~~~~l~visnNlAN~nT~GfK~~~~~F~~~~~~~~~~~~~~~~gv~~~~~---~~~~~qG~l~~Tg~~ 77 (231) T TIGR03506 1 MALYTALSGLNAQSKALDVIANNIANANTTGFKASRAEFSDLLAQSGSGSGQVGGGVRAAAV---GTDFSQGSLQTTGNP 77 (231) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHCCCCCCCCCCCCEEEEEE---EEECCCCCEEECCCC T ss_conf 94899999999999867888888887776443547241788752347887755545784156---876388882566883 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHH Q ss_conf 56788787899888651267777764011366777668764138675300112 Q gi|254780524|r 74 IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 (480) Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (480) T Consensus 78 lDlAI~G~GfF~V~~~------~G~~~yTR~G~F~~d~~G~Lv~~~G~~vlg~ 124 (231) T TIGR03506 78 LDLAINGDGFFAVQTP------DGSEAYTRAGSFQLDANGYLVTADGYPLLGW 124 (231) T ss_pred CEEEECCCEEEEEECC------CCCEEEEECCCEEECCCCCEECCCCCEEECC T ss_conf 2189869638999889------9978487645378989998887899880777

HHsearch alignment for GI: 254780524 and conserved domain: TIGR03506