HHsearch alignment for GI: 254780524 and conserved domain: pfam06429

>pfam06429 DUF1078 Domain of unknown function (DUF1078). This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.
Probab=99.19  E-value=2.6e-11  Score=86.64  Aligned_cols=39  Identities=38%  Similarity=0.532  Sum_probs=37.9

Q ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             288889999999999999999999999999999999874
Q gi|254780524|r  440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG  478 (480)
Q Consensus       440 SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~  478 (480)
T Consensus         1 SnV~~~~Em~~mi~~qr~yqa~~k~i~~~~em~~~~~~~   39 (39)
T pfam06429         1 SNVDLVEEMVNLIEAQRAYEANAKVIQTADEMLGTLLNL   39 (39)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             988789999999999999899999998899999998763