HHsearch alignment for GI: 254780524 and conserved domain: pfam06429
>pfam06429 DUF1078 Domain of unknown function (DUF1078). This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.
Probab=99.19 E-value=2.6e-11 Score=86.64 Aligned_cols=39 Identities=38% Similarity=0.532 Sum_probs=37.9
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 288889999999999999999999999999999999874
Q gi|254780524|r 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 (480)
Q Consensus 440 SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~ 478 (480)
T Consensus 1 SnV~~~~Em~~mi~~qr~yqa~~k~i~~~~em~~~~~~~ 39 (39)
T pfam06429 1 SNVDLVEEMVNLIEAQRAYEANAKVIQTADEMLGTLLNL 39 (39)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 988789999999999999899999998899999998763