Query gi|254780524|ref|YP_003064937.1| flagellar hook-associated protein FlgK [Candidatus Liberibacter asiaticus str. psy62] Match_columns 480 No_of_seqs 130 out of 1801 Neff 10.7 Searched_HMMs 33803 Date Wed Jun 1 18:36:53 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780524.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2d4y_A HAP1, flagellar HOOK-a 100.0 3E-33 8.9E-38 221.6 20.5 371 59-453 3-376 (376) 2 >1ucu_A Phase 1 flagellin; fla 88.3 1.1 3.4E-05 20.6 5.3 53 428-480 27-80 (80) 3 >1ory_B Flagellin; flagellar c 68.0 2.1 6.3E-05 18.9 1.2 49 432-480 7-55 (55) 4 >1wlg_A Flagellar HOOK protein 64.0 0.15 4.6E-06 26.0 -5.3 18 429-446 42-59 (59) 5 >3a69_A Flagellar HOOK protein 32.8 0.68 2E-05 22.0 -6.1 62 59-126 10-71 (113) 6 >1lln_A Antiviral protein 3; r 30.8 19 0.00055 13.1 1.0 20 18-37 12-31 (57) 7 >3cec_A Putative antidote prot 15.4 45 0.0013 10.7 1.1 19 462-480 38-56 (56) 8 >1nei_A Hypothetical protein Y 14.9 46 0.0014 10.7 1.5 15 466-480 33-47 (60) 9 >1wlg_A Flagellar HOOK protein 10.9 6.9 0.0002 15.8 -4.9 43 383-427 40-82 (83) 10 >2cos_A Serine/threonine prote 10.4 67 0.002 9.7 1.4 9 470-478 11-19 (54) No 1 >>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium} (A:1-268,A:356-463) Probab=100.00 E-value=3e-33 Score=221.62 Aligned_cols=371 Identities=15% Similarity=0.162 Sum_probs=290.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCC Q ss_conf 06887888775444556788787899888651267777764011366777668764138675300112210122222210 Q gi|254780524|r 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNF 138 (480) Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (480) .|.|+..+++...+..++...........+.+|..+ ..++...+..|+..|..+..+|.+...+..++..+..++..+ T Consensus 3 ~D~fl~~q~r~~~s~~~~~~~~~~~l~~le~~~~e~--~~gl~~~l~~ff~a~~~ls~~P~~~~~R~~vl~~a~~L~~~~ 80 (376) T 2d4y_A 3 YDAFITNQLRGAQNQSSGLTTRYEQMSKIDNLLADK--SSSLSGSLQSFFTSLQTLVSNAEDPAARQALIGKAEGLVNQF 80 (376) T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT--TTCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH T ss_conf 579999999999877778999999999999985899--877899999999999999868798899999999999999999 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCE Q ss_conf 00224565665432000111278788754343210112223456--6765210012100001010020124787337711 Q gi|254780524|r 139 NTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 (480) Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~v~~~n~~~~~~~~~n~~~~~~~~--~~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~ 216 (480) +..+..+..++......+...|.++|.++.+++.+|..|..... .+..+++++|+||.+++++++++++.+....++. T Consensus 81 n~~~~~L~~l~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~~~~~~~~g~~~ndLlDqRD~ll~eLS~~i~i~v~~~~~G~ 160 (376) T 2d4y_A 81 KTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISRMTGVGAGASPNDLLDQRDQLVSELNKIVGVEVSVQDGGT 160 (376) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHSCEEEEEETTTE T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCC T ss_conf 99999999999999999999999999999999999999999861468999067789999999998766070478627885 Q ss_pred EEEECCCCEEEECCCCCE-EEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHH Q ss_conf 478706970610344412-5763045666766432167336556656776667653111011102331367787887655 Q gi|254780524|r 217 MVVYTSDGTTLFETVPRD-INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 (480) Q Consensus 217 ~~v~~~~g~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (480) +.|+..+|.+|++..... +..... ...........................+|+++|+..+|+..++.++..++.++. T Consensus 161 v~V~~~~G~~LV~g~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~l~gll~~rd~~l~~~~~~Ld~lA~ 239 (376) T 2d4y_A 161 YNLTMANGYTLVQGSTARQLAAVPS-SADPTRTTVAYVDEAAGNIEIPEKLLNTGSLGGLLTFRSQDLDQTRNTLGQLAL 239 (376) T ss_dssp EEEEETTCCEEEETTEECCEEEEEC-SSCTTCEEEEEEETTTEEEECCGGGGCSHHHHHHHHHHHHTHHHHHHHHHHHHH T ss_pred EEEEECCCEEECCCCCCCEEEEECC-CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 1267279715035775320465204-677775226773267775445534467521002678864202456778999999 Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH Q ss_conf 43100123455777777654321122345666654332222223333346662100024566665555666544310245 Q gi|254780524|r 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375 (480) Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (480) .+++.++..|..|.+..+..+..++.......... ....+..++.... ......+.....++.... T Consensus 240 ~la~~~N~~~~~G~~~~g~~g~~~f~~~~~~~~~~---------~~~~~~~~~~~~~-----~~~~~~~~~~~~gDn~na 305 (376) T 2d4y_A 240 AFADAFNAQHTKGYDADGNKGKDFFSIGSAIVDMN---------VKVTNEAEIAMAS-----ESKLDPDVDTGDSDNRNG 305 (376) T ss_dssp HHHHHHHHHHTTSBCTTSCBCCCCEECCCTTTTCE---------ECCCCGGGCCCBS-----SCCC--------CCCHHH T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH---------HHCCCHHHHHHCC-----CCCCCCCCCCCCCCHHHH T ss_conf 99998887540256777877865312355565303---------4227878764305-----565578766788867999 Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH Q ss_conf 676642011112333345677652899998777887664211123223456799999998876628888999999999 Q gi|254780524|r 376 NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 (480) Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~ 453 (480) ..... .. ......++.+|.++|..+++.+++.++.+....+..+..+.++...+.+.|+|+|+||++|||+ T Consensus 306 ~~l~~------lq-~~~~~~g~~T~~~~y~~~v~~vG~~~~~a~~~~~~~~~~~~~~~~~r~svSGVnlDEE~anlik 376 (376) T 2d4y_A 306 QALLD------LQ-NSNVVGGNKTFNDAYATLVSDVGNKTSTLKTSSTTQANVVKQLYKQQQSVSGVNLDEEYGNLQR 376 (376) T ss_dssp HHHHG------GG-GSCCBTTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------- T ss_pred HHHHH------CH-HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC T ss_conf 99984------31-2357689863999999999999999999999999999999999999984206179999998549 No 2 >>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium} (A:1-40,A:455-494) Probab=88.31 E-value=1.1 Score=20.61 Aligned_cols=53 Identities=11% Similarity=0.214 Sum_probs=44.1 Q ss_pred HHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9999999887-6628888999999999999999999999999999999987409 Q gi|254780524|r 428 VFNHISESYS-NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480) Q Consensus 428 ~~g~i~~~~l-E~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480) .+..+.+|.- ...-+|+++|++++-+.|==.||..-++.-++++=|.++.+.| T Consensus 27 sm~rLSSG~RINsADaD~A~E~~~~tk~qIL~Qa~~amLaQAN~~pq~vl~LLq 80 (80) T 1ucu_A 27 AIERLSSGLRINSADSDYATEVSNMSRAQILQQAGTSVLAQANQVPQNVLSLLR 80 (80) T ss_dssp HHHHHHTSCCTTTSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC T ss_pred HHHHHHHCCCCCCCHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC T ss_conf 999861148647821319999999999999999999999997416789998409 No 3 >>1ory_B Flagellin; flagellar chaperone, cytosolic export chaperone, FLIS, FLIC; 2.45A {Aquifex aeolicus} (B:) Probab=68.01 E-value=2.1 Score=18.95 Aligned_cols=49 Identities=12% Similarity=0.157 Sum_probs=41.8 Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9998876628888999999999999999999999999999999987409 Q gi|254780524|r 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480) Q Consensus 432 i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480) +......+--+|+++|++++-+.|==.||..-++.-++++-|.+|.|.| T Consensus 7 ~~aA~SrI~DaD~A~E~~~~tk~qIL~Qa~~amLaQAN~~pq~vL~LLq 55 (55) T 1ory_B 7 TDNAESIIRNVDFAKEMTEFTKYQIRMQSGVAMLAQANALPQLVLQLLR 55 (55) T ss_dssp ---------CHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHC- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC T ss_conf 9999846540559999999999999999999999998526789997519 No 4 >>1wlg_A Flagellar HOOK protein FLGE; EAR-& motif, structural protein; 1.80A {Salmonella typhimurium} (A:47-61,A:219-244,A:282-299) Probab=64.04 E-value=0.15 Score=25.95 Aligned_cols=18 Identities=17% Similarity=0.394 Sum_probs=12.8 Q ss_pred HHHHHHHHHHHHCCCHHH Q ss_conf 999999887662888899 Q gi|254780524|r 429 FNHISESYSNTVGVNLQE 446 (480) Q Consensus 429 ~g~i~~~~lE~SNVDL~e 446 (480) ||++.+++||.|||||+. T Consensus 42 fg~lt~gale~snvdlsk 59 (59) T 1wlg_A 42 FGKLTNGALEASNVDLSK 59 (59) T ss_dssp BCCCSSCEEEEC------ T ss_pred CEEEEECCEEHHHCCCCC T ss_conf 234851744223326268 No 5 >>3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor, universal joint, bacterial flagellum, motor protein; 7.10A {Salmonella enterica subsp} (A:48-116,A:315-358) Probab=32.79 E-value=0.68 Score=21.99 Aligned_cols=62 Identities=8% Similarity=-0.027 Sum_probs=44.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHH Q ss_conf 06887888775444556788787899888651267777764011366777668764138675300112 Q gi|254780524|r 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 (480) Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (480) ...+.++.+..+...++.++.+.+||.+.. ..+...++|.+.|..+-++++.++.+.++... T Consensus 10 ~~~~~qG~l~~T~~~lDlAI~G~GfF~V~~------~~G~~~yTR~G~F~ld~~G~Lvt~~G~~vlal 71 (113) T 3a69_A 10 TQDFTDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGMQLTVL 71 (113) T ss_dssp --------------CEECCCSSSCEEEEEC------TTCCEEEESCCEEEECTTSCEECTTCCEEECE T ss_pred EEEECCCCEEECCCHHHHHHCCCCCEEEEC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 996045545762645566622786036751------57860001345422047887123567400234 No 6 >>1lln_A Antiviral protein 3; ribosome inactivating protein, polynucleotide:adenosine, hydrolase; HET: MLY; 1.60A {Phytolacca americana} (A:192-248) Probab=30.80 E-value=19 Score=13.11 Aligned_cols=20 Identities=10% Similarity=0.169 Sum_probs=13.6 Q ss_pred HHHHHHHHHHHCCCCCCCCE Q ss_conf 99867874420257899812 Q gi|254780524|r 18 SQQFASIVRNIENADNKNYV 37 (480) Q Consensus 18 q~~ldvisnNIANvnT~Gyk 37 (480) .+.-|.||+-||-|||+|-. T Consensus 12 e~~wd~~s~~iakv~t~g~s 31 (57) T 1lln_A 12 EKNWDSVSXVIAKVGTSGDS 31 (57) T ss_dssp HTTHHHHHHHHHHCCCCSSC T ss_pred HHCHHHHHHHHHHHHCCCCC T ss_conf 63698880999986526997 No 7 >>3cec_A Putative antidote protein of plasmid maintenance system; ZP_00107635.1, structural genomics, joint center for structural genomics; HET: MSE; 1.60A {Nostoc punctiforme pcc 73102} (A:1-56) Probab=15.36 E-value=45 Score=10.74 Aligned_cols=19 Identities=11% Similarity=0.464 Sum_probs=13.5 Q ss_pred HHHHHHHHHHHHHHHHHHC Q ss_conf 9999999999999987409 Q gi|254780524|r 462 NKLIMFTDKMLQTLLEGVK 480 (480) Q Consensus 462 akvItT~Demlq~Lin~~R 480 (480) |+.|-.+-.-++++||.|| T Consensus 38 A~~lgvs~~~is~Ii~gkR 56 (56) T 3cec_A 38 AEILGVSNQTIQEVINGQR 56 (56) T ss_dssp HHHHTSCHHHHHHHHTTSS T ss_pred HHHHCCCHHHHHHHHCCCC T ss_conf 9997827899999981776 No 8 >>1nei_A Hypothetical protein YOAG; alpha/beta protein, homodimer, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Escherichia coli} (A:) Probab=14.94 E-value=46 Score=10.67 Aligned_cols=15 Identities=13% Similarity=0.384 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHC Q ss_conf 999999999987409 Q gi|254780524|r 466 MFTDKMLQTLLEGVK 480 (480) Q Consensus 466 tT~Demlq~Lin~~R 480 (480) ..+-++..+|||.+| T Consensus 33 ~vaa~~vKdLvNiVR 47 (60) T 1nei_A 33 EVAAEVIKDLVNTVR 47 (60) T ss_dssp HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHH T ss_conf 779999999998872 No 9 >>1wlg_A Flagellar HOOK protein FLGE; EAR-& motif, structural protein; 1.80A {Salmonella typhimurium} (A:1-46,A:245-281) Probab=10.94 E-value=6.9 Score=15.79 Aligned_cols=43 Identities=16% Similarity=0.150 Sum_probs=0.0 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 111123333456776528999987778876642111232234567 Q gi|254780524|r 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427 (480) Q Consensus 383 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~t~~sg~~~~~~~~~~ 427 (480) ........++.+.+...|.....++ |.++..||.+..+.|+++ T Consensus 40 ~~G~~vl~la~F~N~~GL~~~G~n~--~~~T~~SG~p~~g~pgtg 82 (83) T 1wlg_A 40 MQGMQLTVLANFANNEGLASQGDNV--WAATQASGVALLGTAGSG 82 (83) T ss_dssp TTCCEEECEEECSCGGGSEECSTTC--EECCTTTCCCEEECTTBT T ss_pred CCCCEEEEEEECCCHHHHHHCCCCE--EECCCCCCCCEECCCCCC T ss_conf 9999898999607978813115972--776445787443579989 No 10 >>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} (A:) Probab=10.37 E-value=67 Score=9.69 Aligned_cols=9 Identities=44% Similarity=0.726 Sum_probs=0.0 Q ss_pred HHHHHHHHH Q ss_conf 999999874 Q gi|254780524|r 470 KMLQTLLEG 478 (480) Q Consensus 470 emlq~Lin~ 478 (480) +|||+|.+. T Consensus 11 QMlqdl~~a 19 (54) T 2cos_A 11 QMLQELVNA 19 (54) T ss_dssp HHHHHHHHH T ss_pred HHHHHHHHC T ss_conf 999999990 Done!