RPSBLAST alignment for GI: 254780524 and conserved domain: TIGR02492
>gnl|CDD|162886 TIGR02492, flgK_ends, flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model. Length = 322
Score = 139 bits (351), Expect = 2e-33
Identities = 80/306 (26%), Positives = 150/306 (49%), Gaps = 24/306 (7%)
Query: 16 NASQ-QFASIVRNIENADNKNYVRRDTMTTISP----------ENVTVVT-QRSENKNMF 63
+ASQ + NI NA+ Y R+ + T P V V + +R +++ +
Sbjct: 11 SASQIALSVTSNNIANANTPGYSRQRAVLTAVPGGGQGGLQIGTGVRVTSIRRIQDQFLD 70
Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
++ A+SSA + ++ + + D + + Y++ ++L+ +KN + L
Sbjct: 71 NQYRRANSSAGYADSRASALSQIENLFNDLD--ESGLSTYLNNFFNALQELAKNPDSEAL 128
Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA- 182
+ V+++A+ + +FN ++ E+Q +R + EI+ ++ + L ++ +N I+ A
Sbjct: 129 RQAVLESAQALANSFNQTSNELQDLRKGINAEIKSAVTEINSLLKQIASLNKEIQQVEAK 188
Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
S DA+D LDQRD+LL+++S++IGIS + + VYT G L + +
Sbjct: 189 SGQDANDLLDQRDLLLKELSQLIGISVSENEDGTVNVYTGSGQVLVDGGTGSST----SP 244
Query: 243 YTVTSESNPIFIDGVVVSS-----NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
T + + DGV + S S GK+ LL +RD V+P Q+QLD++A+ L
Sbjct: 245 LTADTAGGKVGGDGVYLPSGSEKVTISSDSQGGKLGGLLDLRDGVLPDLQSQLDQLAKTL 304
Query: 298 IGSFSE 303
F+E
Sbjct: 305 ANEFNE 310