RPSBLAST alignment for GI: 254780524 and conserved domain: COG1256
>gnl|CDD|31448 COG1256, FlgK, Flagellar hook-associated protein [Cell motility and secretion]. Length = 552
Score = 170 bits (432), Expect = 7e-43
Identities = 116/555 (20%), Positives = 214/555 (38%), Gaps = 78/555 (14%)
Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDT-MTTISPEN---------V 50
MSL ++ N A + N A NI NA+ Y R+ TT P V
Sbjct: 1 MSLFSLLNTALSGLNAAQAALDVTGHNISNANTPGYSRQRVIQTTNIPYLGGGLNVGTGV 60
Query: 51 TVVT-QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
VV+ QR ++ + ++ +A+S + L+ ++S +S + ++ +
Sbjct: 61 NVVSIQRLRDEFLTNQYRNANSQSSYLDTRASQLSQLESLLSEPS--ESSLSTLLNDFFN 118
Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
SL+ + N S+ + V+ A+ +V N + ++ +R D + EI + + L +
Sbjct: 119 SLQELASNPSDTAARQAVLSKAQTLVNQINNTYEQLTDLRKDINAEIAATVDEVNSLLKQ 178
Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
+ +N I+ A+ +D +D LDQRD L+ ++S++IGIS R + D + T +GTTL E
Sbjct: 179 IADLNKQIRKVKAAGNDPNDLLDQRDQLVDELSQLIGISVSKREDGDYNLTTGNGTTLVE 238
Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA-VPKGKIKALLQIR--------D 280
+ F + + N I++DG + + + GK+ LL +R +
Sbjct: 239 GSEAKV-FAPLPGSDDETRGNVIYVDGDDEKAGNITNTLSGGKLGGLLDLRSDELAPTLN 297
Query: 281 SVVPIFQNQLDEMARVLIGSF-------SEKDPIAGNSENVPGLFIADGIK--------- 324
++ + + LDE + ++ I G + I
Sbjct: 298 TLGQLALSFLDEFNKGHGAGLDLNGAEGADFFNIEGLPVILTNDKSNGNISSGGFTVSDA 357
Query: 325 --------DLDNKLCQGISETICVNPQYRSN-------PSFLRDGGSVSKKFLWNVKNLA 369
+ + GI+ + N ++ + P+ DGG+
Sbjct: 358 NKVGATTIPVTGDVVPGIATRLSDNVTFQISPDAANGNPTLTFDGGANFAGGYVVNDAFT 417
Query: 370 GYPDLINHYCDSFNK------------NFIFDPVAGI------------NTNVTLLEYAR 405
G + + IFD + T +Y
Sbjct: 418 GKAASSSLLNLAVLATPSTKVAFAAPDFTIFDNANALALLNLQNNKKLVGGKSTFSDYYA 477
Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
+GW+ S + + + N ++ + GVNL EE++ LI+ +Q+Y S K+I
Sbjct: 478 GLVGWIGIKASTASSESDAKEALLNQLTSERQSISGVNLDEEMANLIQFQQAYQASAKVI 537
Query: 466 MFTDKMLQTLLEGVK 480
D+ML TLL V
Sbjct: 538 QTVDEMLDTLLNIVG 552