RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780524|ref|YP_003064937.1| flagellar hook-associated
protein FlgK [Candidatus Liberibacter asiaticus str. psy62]
(480 letters)
>gnl|CDD|31448 COG1256, FlgK, Flagellar hook-associated protein [Cell motility and
secretion].
Length = 552
Score = 170 bits (432), Expect = 7e-43
Identities = 116/555 (20%), Positives = 214/555 (38%), Gaps = 78/555 (14%)
Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDT-MTTISPEN---------V 50
MSL ++ N A + N A NI NA+ Y R+ TT P V
Sbjct: 1 MSLFSLLNTALSGLNAAQAALDVTGHNISNANTPGYSRQRVIQTTNIPYLGGGLNVGTGV 60
Query: 51 TVVT-QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
VV+ QR ++ + ++ +A+S + L+ ++S +S + ++ +
Sbjct: 61 NVVSIQRLRDEFLTNQYRNANSQSSYLDTRASQLSQLESLLSEPS--ESSLSTLLNDFFN 118
Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
SL+ + N S+ + V+ A+ +V N + ++ +R D + EI + + L +
Sbjct: 119 SLQELASNPSDTAARQAVLSKAQTLVNQINNTYEQLTDLRKDINAEIAATVDEVNSLLKQ 178
Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
+ +N I+ A+ +D +D LDQRD L+ ++S++IGIS R + D + T +GTTL E
Sbjct: 179 IADLNKQIRKVKAAGNDPNDLLDQRDQLVDELSQLIGISVSKREDGDYNLTTGNGTTLVE 238
Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA-VPKGKIKALLQIR--------D 280
+ F + + N I++DG + + + GK+ LL +R +
Sbjct: 239 GSEAKV-FAPLPGSDDETRGNVIYVDGDDEKAGNITNTLSGGKLGGLLDLRSDELAPTLN 297
Query: 281 SVVPIFQNQLDEMARVLIGSF-------SEKDPIAGNSENVPGLFIADGIK--------- 324
++ + + LDE + ++ I G + I
Sbjct: 298 TLGQLALSFLDEFNKGHGAGLDLNGAEGADFFNIEGLPVILTNDKSNGNISSGGFTVSDA 357
Query: 325 --------DLDNKLCQGISETICVNPQYRSN-------PSFLRDGGSVSKKFLWNVKNLA 369
+ + GI+ + N ++ + P+ DGG+
Sbjct: 358 NKVGATTIPVTGDVVPGIATRLSDNVTFQISPDAANGNPTLTFDGGANFAGGYVVNDAFT 417
Query: 370 GYPDLINHYCDSFNK------------NFIFDPVAGI------------NTNVTLLEYAR 405
G + + IFD + T +Y
Sbjct: 418 GKAASSSLLNLAVLATPSTKVAFAAPDFTIFDNANALALLNLQNNKKLVGGKSTFSDYYA 477
Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
+GW+ S + + + N ++ + GVNL EE++ LI+ +Q+Y S K+I
Sbjct: 478 GLVGWIGIKASTASSESDAKEALLNQLTSERQSISGVNLDEEMANLIQFQQAYQASAKVI 537
Query: 466 MFTDKMLQTLLEGVK 480
D+ML TLL V
Sbjct: 538 QTVDEMLDTLLNIVG 552
>gnl|CDD|146311 pfam03607, DCX, Doublecortin.
Length = 60
Score = 30.9 bits (71), Expect = 0.75
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 9/43 (20%)
Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225
S+ F D LL ++E + + T VR +YT DG
Sbjct: 4 SRRRFKSF----DALLDDLTEKVKLPTGVRK-----LYTPDGH 37
>gnl|CDD|31391 COG1198, PriA, Primosomal protein N' (replication factor Y) -
superfamily II helicase [DNA replication, recombination,
and repair].
Length = 730
Score = 29.9 bits (67), Expect = 1.4
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
+ G+VV + S V K+K + ++ D+ + L
Sbjct: 42 VVGIVVELSSESDVDGRKLKEIERVLDTEPVLTPELLR 79
>gnl|CDD|39610 KOG4409, KOG4409, KOG4409, Predicted hydrolase/acyltransferase
(alpha/beta hydrolase superfamily) [General function
prediction only].
Length = 365
Score = 29.9 bits (67), Expect = 1.4
Identities = 17/126 (13%), Positives = 37/126 (29%), Gaps = 17/126 (13%)
Query: 333 GISETICVNP-QYRSNPSFLRDGGSVSKKF--LWNVKNLAGY---------PDLINHYCD 380
G E P + P + + V+ F L ++ + PD +
Sbjct: 195 GFPEKPDSEPEFTKPPPEWYKALFLVATNFNPLALLRLMGPLGPKLVSRLRPDRFRKFPS 254
Query: 381 SFNKNFIFDPVAGIN----TNVTLLEYARNSIGWLEKNRSDS-HDLHMKSQVVFNHISES 435
++F+ + + N + T + GW + +L V F +
Sbjct: 255 LIEEDFLHEYIYHCNAQNPSGETAFKNLFEPGGWARRPMIQRLRELKKDVPVTFIYGDRD 314
Query: 436 YSNTVG 441
+ +
Sbjct: 315 WMDKNA 320
>gnl|CDD|31935 COG1749, FlgE, Flagellar hook protein FlgE [Cell motility and
secretion].
Length = 423
Score = 29.9 bits (67), Expect = 1.5
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
+ N S + L F IS V+L +EL+ LI ++ Y + K+I +D
Sbjct: 353 YAATNNSGAASLGAAGVGGFGKISSGALEMSNVDLAKELTNLIVAQRGYQANAKVITTSD 412
Query: 470 KMLQTLL 476
+MLQTL+
Sbjct: 413 QMLQTLV 419
>gnl|CDD|146444 pfam03805, CLAG, Cytoadherence-linked asexual protein. Clag
(cytoadherence linked asexual gene) is a malaria surface
protein which has been shown to be involved in the
binding of Plasmodium falciparum infected erythrocytes
to host endothelial cells, a process termed
cytoadherence. The cytoadherence phenomenon is
associated with the sequestration of infected
erythrocytes in the blood vessels of the brain, cerebral
malaria. Clag is a multi-gene family in Plasmodium
falciparum with at least 9 members identified to date.
Orthologous proteins in the rodent malaria species
Plasmodium chabaudi (Lawson D Unpubl. obs.) suggest that
the gene family is found in other malaria species and
may play a more generic role in cytoadherence.
Length = 1282
Score = 29.3 bits (66), Expect = 2.7
Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
+ + + + ++V+ I +Y Q + L K +NI+NK+++ D
Sbjct: 708 VLSQKFVAPKYNKWNEVLKKIIESAYEMYFN---QRHVKNLFKYHDIFNINNKIMLMRD 763
>gnl|CDD|39054 KOG3850, KOG3850, KOG3850, Predicted membrane protein [Function
unknown].
Length = 455
Score = 28.9 bits (64), Expect = 3.1
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 8/86 (9%)
Query: 55 QRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
Q + K +F+K AH+ A Q++L Q LKE+ + + S K RD
Sbjct: 81 QVARIKQVFEKKNQKSAHTIAQLQKKLEQYHRRLKEIENGE--SRPSKD----KSRDFPT 134
Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNF 138
K I+ A+EV + F
Sbjct: 135 GIRKAKGMTEAMVNPIEFAQEVKKAF 160
>gnl|CDD|34397 COG4786, FlgG, Flagellar basal body rod protein [Cell motility and
secretion].
Length = 265
Score = 28.3 bits (63), Expect = 4.6
Identities = 12/44 (27%), Positives = 26/44 (59%)
Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
I + + VN+ EE++ +I+ +++Y ++K+I D+ML
Sbjct: 217 IRQGFLEASNVNVVEEMTDMIEAQRAYEANSKVIQTADEMLGKA 260
>gnl|CDD|30404 COG0055, AtpD, F0F1-type ATP synthase, beta subunit [Energy
production and conversion].
Length = 468
Score = 28.2 bits (63), Expect = 5.6
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA--------DADKEIELEI 160
D L+S S+ L I+G+ + A E VQ+ +E+Q I A + DK
Sbjct: 341 DPLDSTSRALDPKIVGEEHYEVARE-VQSILQRYKELQDIIAILGMDELSEEDKLTVARA 399
Query: 161 SNLRRFLSE 169
++RFLS+
Sbjct: 400 RKIQRFLSQ 408
>gnl|CDD|39793 KOG4593, KOG4593, KOG4593, Mitotic checkpoint protein MAD1 [Cell
cycle control, cell division, chromosome partitioning].
Length = 716
Score = 28.1 bits (62), Expect = 5.7
Identities = 26/160 (16%), Positives = 56/160 (35%), Gaps = 13/160 (8%)
Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
+T +R E K L + S+ Q L Q +E + K
Sbjct: 461 REITGQKKRLEKLEHELKDLQSQLSSREQSLLFQR----EESELLREKIEQ-----YLKE 511
Query: 108 RDSLESYSKNLSEDILGKTVIDNAEE----VVQNFNTSAREVQKIRADADKEIELEISNL 163
+ LE + L + + + + EE V+ + ++I+ + +E++ E+ L
Sbjct: 512 LELLEEENDRLRAQLERRLLQGDYEENITRVLHMSTNPTSKARQIKKNRLEELQAELERL 571
Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISE 203
+ L+ L + + H F + L +++
Sbjct: 572 KERLTALEGDKMQFRDGEIAVHSLLAFSKEVAQLKKEVES 611
>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III
myosin-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), Class III myosin-like
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin-like subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Class III myosins are motor
proteins with an N-terminal kinase catalytic domain and
a C-terminal actin-binding motor domain. Class III
myosins are present in the photoreceptors of
invertebrates and vertebrates and in the auditory hair
cells of mammals. The kinase domain of myosin III can
phosphorylate several cytoskeletal proteins,
conventional myosin regulatory light chains, and can
autophosphorylate the C-terminal motor domain. Myosin
III may play an important role in maintaining the
structural integrity of photoreceptor cell microvilli.
It may also function as a cargo carrier during
light-dependent translocation, in photoreceptor cells,
of proteins such as transducin and arrestin. The
Drosophila class III myosin, called NinaC (Neither
inactivation nor afterpotential protein C), is critical
in normal adaptation and termination of photoresponse.
Vertebrates contain two isoforms of class III myosin,
IIIA and IIIB. This subfamily also includes mammalian
NIK-like embryo-specific kinase (NESK), Traf2- and
Nck-interacting kinase (TNIK), mitogen-activated protein
kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or
MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in
some MAPK signaling pathways by activating a MAPK kinase
kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is
activated either by a small GTP-binding protein or by an
adaptor protein, which transmits the signal either
directly to a MAP3K to start the triple kinase core
cascade or indirectly through a mediator kinase, a
MAP4K. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
Length = 275
Score = 27.6 bits (62), Expect = 6.8
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 142 AREVQKIRADADKEIELEISNLRRF 166
A ++ I D ++EI+ E + LR++
Sbjct: 35 AIKIMDIIEDEEEEIKEEYNILRKY 59
>gnl|CDD|147689 pfam05667, DUF812, Protein of unknown function (DUF812). This
family consists of several eukaryotic proteins of
unknown function.
Length = 536
Score = 27.8 bits (62), Expect = 7.4
Identities = 28/161 (17%), Positives = 57/161 (35%), Gaps = 24/161 (14%)
Query: 76 QQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS-----------------LESYSKNL 118
+ L+ + +LKE + I KLR+ L +N
Sbjct: 363 RTPLIDEYRSLKEKNRNKEDETQRQLDEIKKLRNKIEELESELQTKEQLYKQLLDEYENA 422
Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
+ + E+++N ++ KI +D + ++ EI+N+ L V D +
Sbjct: 423 PKSVSRSAYTRRILEIIKNIKKQKEDIDKILSDT-RSLQKEINNITGKLDRTFTVTDELL 481
Query: 179 FKTASKHD-----AHDFLDQRDVLLQKISEIIGISTIVRNN 214
F+ A K D A+ L ++ E + + ++
Sbjct: 482 FRDA-KKDEHAKKAYKLLAALHENCSELIETVEETGNIKRE 521
>gnl|CDD|144701 pfam01201, Ribosomal_S8e, Ribosomal protein S8e.
Length = 130
Score = 27.5 bits (62), Expect = 7.6
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 20 QFASIVRNIENADNKNYVRRDTMT 43
+ I+ + N N YVRR+ +T
Sbjct: 75 RKVRILGVVYNPANNEYVRRNIIT 98
>gnl|CDD|34145 COG4467, COG4467, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 114
Score = 27.6 bits (61), Expect = 8.9
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 6/69 (8%)
Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIE------LEISNLRRFLSELTVVNDAIK 178
K + D + + + E+ ++ +E LE LR L E T+ A+K
Sbjct: 4 KEIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGEPTLEKTAVK 63
Query: 179 FKTASKHDA 187
+ +
Sbjct: 64 KEKPAVKKK 72
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.315 0.131 0.362
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,382,206
Number of extensions: 282966
Number of successful extensions: 727
Number of sequences better than 10.0: 1
Number of HSP's gapped: 726
Number of HSP's successfully gapped: 35
Length of query: 480
Length of database: 6,263,737
Length adjustment: 98
Effective length of query: 382
Effective length of database: 4,146,055
Effective search space: 1583793010
Effective search space used: 1583793010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.6 bits)