RPSBLAST alignment of GI: 254780524 and protein with PDBid: 2d4y

>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium} Length = 463

 Score = 91.5 bits (226), Expect = 4e-19
 Identities = 40/257 (15%), Positives = 102/257 (39%), Gaps = 5/257 (1%)

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
           + +++  A + + G     +    +  +++      +S +  +     SL++   N  + 
Sbjct: 7   ITNQLRGAQNQSSGLTTRYEQMSKIDNLLADKS---SSLSGSLQSFFTSLQTLVSNAEDP 63

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK--F 179
              + +I  AE +V  F T+ + ++      +  I   ++ +  +  ++  +ND I    
Sbjct: 64  AARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISRMT 123

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
              +    +D LDQRD L+ ++++I+G+   V++     +  ++G TL +          
Sbjct: 124 GVGAGASPNDLLDQRDQLVSELNKIVGVEVSVQDGGTYNLTMANGYTLVQGSTARQLAAV 183

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            +S   T  +     +           +  G +  LL  R   +   +N L ++A     
Sbjct: 184 PSSADPTRTTVAYVDEAAGNIEIPEKLLNTGSLGGLLTFRSQDLDQTRNTLGQLALAFAD 243

Query: 300 SFSEKDPIAGNSENVPG 316
           +F+ +     +++   G
Sbjct: 244 AFNAQHTKGYDADGNKG 260