HHsearch alignment for GI: 254780525 and conserved domain: COG1256
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion].
Probab=100.00 E-value=0 Score=312.27 Aligned_cols=210 Identities=15% Similarity=0.119 Sum_probs=130.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCH
Q ss_conf 94458899999999999986378877530277867142200246543047777631220588578863034111214830
Q gi|254780525|r 1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMISEQGSLMHTASN 80 (421)
Q Consensus 1 MSl~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~~~~~~~~~t~~~ 80 (421)
T Consensus 1 ms~~s~lnta~sgl~a~q~~l~vtg~NIsNant~gYsRQrv~~~~~~~~~~~~~~~G~Gv~V~sI~R~~d~fl~~q~~~a 80 (552)
T COG1256 1 MSLFSLLNTALSGLNAAQAALDVTGHNISNANTPGYSRQRVIQTTNIPYLGGGLNVGTGVNVVSIQRLRDEFLTNQYRNA 80 (552)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHH
T ss_conf 95267799999999999999987561335689998630210432356643576666676488863116879999999988
Q ss_pred HHH----------HHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 221----------1036662010179882564201122212367201455620111110134555432344544444444
Q gi|254780525|r 81 TDL----------AIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERINVK 150 (421)
Q Consensus 81 ~d~----------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (421)
T Consensus 81 ~s~~s~~~t~~~~L~~le~ll~~~~--~~sl~~~L~~ff~s~q~la~~P~~~a~r~~vl~~a~~l~~~in~~~~~L~~l~ 158 (552)
T COG1256 81 NSQSSYLDTRASQLSQLESLLSEPS--ESSLSTLLNDFFNSLQELASNPSDTAARQAVLSKAQTLVNQINNTYEQLTDLR 158 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC--CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7666689999999999999847976--35378999999999999985956478999999999999999989999999999
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 45545433321123310245544444444445677654322210367540688736778762
Q gi|254780525|r 151 HAELSAMPTTTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYY 212 (421)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 212 (421)
T Consensus 159 ~~i~~~I~~~V~~vNsLl~qIa~lN~qI~~~~~~g~~~NdLlDqRD~Lv~eLs~~i~i~V~~ 220 (552)
T COG1256 159 KDINAEIAATVDEVNSLLKQIADLNKQIRKVKAAGNDPNDLLDQRDQLVDELSQLIGISVSK 220 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf 88868999999999999999999999999730479993067777999999997462559998