HHsearch alignment for GI: 254780525 and conserved domain: COG1749
>COG1749 FlgE Flagellar hook protein FlgE [Cell motility and secretion].
Probab=100.00 E-value=0 Score=357.65 Aligned_cols=412 Identities=36% Similarity=0.560 Sum_probs=315.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCCCCCC-C-CCEEEEEEEEEECCCCEEECCCH
Q ss_conf 458899999999999986378877530277867142200246543047777631-2-20588578863034111214830
Q gi|254780525|r 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYV-S-GGLEISTKDMISEQGSLMHTASN 80 (421)
Q Consensus 3 l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~~~~~-G-~GV~v~~i~r~~~~~~~~~t~~~ 80 (421)
T Consensus 1 m~~s~~~gvSGm~a~q~~LdvisnNIANanT~GfK~s~~~F~dm~s~s~~g~~~~~~~Gv~~s~i~~i~~qG~~~~T~~~ 80 (423)
T COG1749 1 MLRSFYNGVSGMNAHQFALDVISNNIANANTTGFKRSRAEFSDMFSQSLVGASTYTALGVGVSSISQIFTQGSFQSTGSN 80 (423)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCEEECCCC
T ss_conf 91677666666777664033202341345452113267506632010004554467667146645885158854764786
Q ss_pred HHHHHCCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf 221103666201017-988256420112221236720145562011111013455543234454444444445-545433
Q gi|254780525|r 81 TDLAIQGKGFFIVKG-RDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERINVKHA-ELSAMP 158 (421)
Q Consensus 81 ~d~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 158 (421)
T Consensus 81 ~DlAI~G~GFF~v~~~~~~~~~yTRaG~F~~D~~g~LVn~~G~~l~G~~~~~~~~~~~~~~~--~~~i~i~~~~~~~a~~ 158 (423)
T COG1749 81 LDLAISGNGFFIVQDDSGGTNFYTRAGSFRLDKNGYLVNPAGLYLQGYPANGVTGGINGGTT--LLNIQIPNNNGLPAKA 158 (423)
T ss_pred CCEEEECCEEEEEEECCCCCEEEEECCCCCCCCCCCEECCCCCEEEEEECCCCCCCCCCCCC--CCCEECCCCCCCCCCC
T ss_conf 35799167179997168984588866750176788677688737973124688875114555--3321334566767643
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 32112331024554444444444567765432221036754068873677876213555542047763044444656666
Q gi|254780525|r 159 TTTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTNNSFPYN 238 (421)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (421)
T Consensus 159 tt~~~~~~NL~~~~-~~~~~~~~~n~~~~~~~~~~~s~~~yDs~G~~~~~~~~f~k~~~~tw~v~~~~~~~~~---~p~g 234 (423)
T COG1749 159 TTNVSFSANLNSGA-IVPSITAPFNPTDTATYNYKTSLTVYDSLGNKHTLDVYFVKTGTNTWQVYVLVKSQTG---DPDG 234 (423)
T ss_pred CEEEEEEECCCCCC-CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEEECCCCCEEEEEEECCCCC---CCCC
T ss_conf 20652210148777-5653467878765321145315999926895123567999447871269999435666---8887
Q ss_pred CCCCC-CEEEEECCCCCCCCCCCCCCCCCC---CCCCCC--CCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCC
Q ss_conf 44321-001220244564457765332124---677665--543323333310023333432334-44332344344554
Q gi|254780525|r 239 VAPLN-TVEVSFDPVTGYLANSSHKAISFN---DNTSGI--DQQITIDISKTTQLAGGFIPQKSE-INGHAPGKPKDFSV 311 (421)
Q Consensus 239 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 311 (421)
T Consensus 235 ~a~~~~~~~l~Fd~~-G~L~s~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~s~~~~~~~~~~~~~~qdGy~~G~l~~~~I 313 (423)
T COG1749 235 TADTGTTFTLEFDPA-GALTSGEPGPTEIVGPNVAVNGATLAQGISLDLTGSTQQSTGFSLTVASTQDGYAPGNLKDYRI 313 (423)
T ss_pred CCCCCCEEEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCEEEEEECCCCCCEEEEEEEE
T ss_conf 666664257887798-8601278886434466656576300220453257754885130013456336755305778997
Q ss_pred CCCCEEEEEECCCCCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHHHHHH
Q ss_conf 77633899841432110122200121786787741695266323358702137888761146523100047789999999
Q gi|254780525|r 312 SKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIASELTE 391 (421)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDEEm~n 391 (421)
T Consensus 314 ~~dG~I~~~ysNG~~~~~gqIaLa~F~N~~GL~~~ggN~~~~t~~SG~~~~g~~g~g~~G~i~~gaLE~SNVDls~Eltn 393 (423)
T COG1749 314 DEDGVIVGVYSNGVTQPLGQIALANFANPQGLVKEGGNVYAATNNSGAASLGAAGVGGFGKISSGALEMSNVDLAKELTN 393 (423)
T ss_pred CCCCEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCEEEECCCCCCEEECCCCCCCCEEECCCCCEECCCHHHHHHHH
T ss_conf 79978999971882646667887730480106215895785115678614446887873025016332112118999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999999999999999975129
Q gi|254780525|r 392 LIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 392 Li~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
T Consensus 394 mIvaQR~YqANsK~i~T~D~mlq~lvnLkr 423 (423)
T COG1749 394 LIVAQRGYQANAKVITTSDQMLQTLVNLKR 423 (423)
T ss_pred HHHHHHHCCCCCCEEEEHHHHHHHHHHHCC
T ss_conf 888665044455068605899999986229