HHsearch alignment for GI: 254780525 and conserved domain: COG1749

>COG1749 FlgE Flagellar hook protein FlgE [Cell motility and secretion].
Probab=100.00  E-value=0  Score=357.65  Aligned_cols=412  Identities=36%  Similarity=0.560  Sum_probs=315.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCCCCCC-C-CCEEEEEEEEEECCCCEEECCCH
Q ss_conf             458899999999999986378877530277867142200246543047777631-2-20588578863034111214830
Q gi|254780525|r    3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYV-S-GGLEISTKDMISEQGSLMHTASN   80 (421)
Q Consensus         3 l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~~~~~-G-~GV~v~~i~r~~~~~~~~~t~~~   80 (421)
T Consensus         1 m~~s~~~gvSGm~a~q~~LdvisnNIANanT~GfK~s~~~F~dm~s~s~~g~~~~~~~Gv~~s~i~~i~~qG~~~~T~~~   80 (423)
T COG1749           1 MLRSFYNGVSGMNAHQFALDVISNNIANANTTGFKRSRAEFSDMFSQSLVGASTYTALGVGVSSISQIFTQGSFQSTGSN   80 (423)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCEEECCCC
T ss_conf             91677666666777664033202341345452113267506632010004554467667146645885158854764786


Q ss_pred             HHHHHCCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf             221103666201017-988256420112221236720145562011111013455543234454444444445-545433
Q gi|254780525|r   81 TDLAIQGKGFFIVKG-RDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERINVKHA-ELSAMP  158 (421)
Q Consensus        81 ~d~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  158 (421)
T Consensus        81 ~DlAI~G~GFF~v~~~~~~~~~yTRaG~F~~D~~g~LVn~~G~~l~G~~~~~~~~~~~~~~~--~~~i~i~~~~~~~a~~  158 (423)
T COG1749          81 LDLAISGNGFFIVQDDSGGTNFYTRAGSFRLDKNGYLVNPAGLYLQGYPANGVTGGINGGTT--LLNIQIPNNNGLPAKA  158 (423)
T ss_pred             CCEEEECCEEEEEEECCCCCEEEEECCCCCCCCCCCEECCCCCEEEEEECCCCCCCCCCCCC--CCCEECCCCCCCCCCC
T ss_conf             35799167179997168984588866750176788677688737973124688875114555--3321334566767643


Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf             32112331024554444444444567765432221036754068873677876213555542047763044444656666
Q gi|254780525|r  159 TTTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTNNSFPYN  238 (421)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (421)
T Consensus       159 tt~~~~~~NL~~~~-~~~~~~~~~n~~~~~~~~~~~s~~~yDs~G~~~~~~~~f~k~~~~tw~v~~~~~~~~~---~p~g  234 (423)
T COG1749         159 TTNVSFSANLNSGA-IVPSITAPFNPTDTATYNYKTSLTVYDSLGNKHTLDVYFVKTGTNTWQVYVLVKSQTG---DPDG  234 (423)
T ss_pred             CEEEEEEECCCCCC-CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEEECCCCCEEEEEEECCCCC---CCCC
T ss_conf             20652210148777-5653467878765321145315999926895123567999447871269999435666---8887


Q ss_pred             CCCCC-CEEEEECCCCCCCCCCCCCCCCCC---CCCCCC--CCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCC
Q ss_conf             44321-001220244564457765332124---677665--543323333310023333432334-44332344344554
Q gi|254780525|r  239 VAPLN-TVEVSFDPVTGYLANSSHKAISFN---DNTSGI--DQQITIDISKTTQLAGGFIPQKSE-INGHAPGKPKDFSV  311 (421)
Q Consensus       239 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  311 (421)
T Consensus       235 ~a~~~~~~~l~Fd~~-G~L~s~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~s~~~~~~~~~~~~~~qdGy~~G~l~~~~I  313 (423)
T COG1749         235 TADTGTTFTLEFDPA-GALTSGEPGPTEIVGPNVAVNGATLAQGISLDLTGSTQQSTGFSLTVASTQDGYAPGNLKDYRI  313 (423)
T ss_pred             CCCCCCEEEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCEEEEEECCCCCCEEEEEEEE
T ss_conf             666664257887798-8601278886434466656576300220453257754885130013456336755305778997


Q ss_pred             CCCCEEEEEECCCCCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHHHHHH
Q ss_conf             77633899841432110122200121786787741695266323358702137888761146523100047789999999
Q gi|254780525|r  312 SKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIASELTE  391 (421)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDEEm~n  391 (421)
T Consensus       314 ~~dG~I~~~ysNG~~~~~gqIaLa~F~N~~GL~~~ggN~~~~t~~SG~~~~g~~g~g~~G~i~~gaLE~SNVDls~Eltn  393 (423)
T COG1749         314 DEDGVIVGVYSNGVTQPLGQIALANFANPQGLVKEGGNVYAATNNSGAASLGAAGVGGFGKISSGALEMSNVDLAKELTN  393 (423)
T ss_pred             CCCCEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCEEEECCCCCCEEECCCCCCCCEEECCCCCEECCCHHHHHHHH
T ss_conf             79978999971882646667887730480106215895785115678614446887873025016332112118999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999999999999999999999999975129
Q gi|254780525|r  392 LIEAQRNYAVNSKVFQTGSDFMDILISLKR  421 (421)
Q Consensus       392 Li~~Q~aYqAsArvItt~demldtLlnl~R  421 (421)
T Consensus       394 mIvaQR~YqANsK~i~T~D~mlq~lvnLkr  423 (423)
T COG1749         394 LIVAQRGYQANAKVITTSDQMLQTLVNLKR  423 (423)
T ss_pred             HHHHHHHCCCCCCEEEEHHHHHHHHHHHCC
T ss_conf             888665044455068605899999986229