HHsearch alignment for GI: 254780525 and conserved domain: PRK05841

>PRK05841 flgE flagellar hook protein FlgE; Validated.
Probab=100.00  E-value=0  Score=348.41  Aligned_cols=419  Identities=22%  Similarity=0.348  Sum_probs=249.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCC--------CCCCCCCCEEEEEEEEEECCCCE
Q ss_conf             4588999999999999863788775302778671422002465430477--------77631220588578863034111
Q gi|254780525|r    3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPST--------SNSYVSGGLEISTKDMISEQGSL   74 (421)
Q Consensus         3 l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~--------~~~~~G~GV~v~~i~r~~~~~~~   74 (421)
T Consensus         1 m~~SlysGVSGL~a~~~~ldvIgNNIANvnT~GfK~sr~~F~dl~sq~~~~~~~~~~~~~~~g~Gv~~~~~~~~~~qGsl   80 (605)
T PRK05841          1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAKSVVANDRNYGVTGSGNVLSNKDGEY   80 (605)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCCE
T ss_conf             91788899999999875442330243416762115553537876654304466777656753566587777887046664


Q ss_pred             EECCCHHHHHHCCCCCCCCCCC-C-------------CCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCC
Q ss_conf             2148302211036662010179-8-------------8256420112221236720145562011111013455543234
Q gi|254780525|r   75 MHTASNTDLAIQGKGFFIVKGR-D-------------NVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNS  140 (421)
Q Consensus        75 ~~t~~~~d~a~~~~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  140 (421)
T Consensus        81 ~~T~~~tDlAI~G~GFF~V~~~~~g~~~~~~~g~~~~~~~~YTRaG~F~~D~~G~LV~~~G~~vqG~~~~~~~~g~~~~~  160 (605)
T PRK05841         81 MPSEGEFHMAYQGKGWFVIGPNKNGEFTINKDGFSKKQDNFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNST  160 (605)
T ss_pred             EECCCCCEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEECCCCCEEECCCCCCCCCCCCCCC
T ss_conf             75698404898177179862278874111466556556624723777538999978879988797730465667743455


Q ss_pred             C----------CCCCCCCC-CCCCCCCCCCCCEEEEECCCCCCCCCCC-----------------------CCCCCCCCC
Q ss_conf             4----------54444444-4455454333211233102455444444-----------------------444456776
Q gi|254780525|r  141 F----------QGLERINV-KHAELSAMPTTTGFISNNLDKNATIITP-----------------------DKTPKHNGR  186 (421)
Q Consensus       141 ~----------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~  186 (421)
T Consensus       161 ~~~~~~~~~~~~~~~~~~ip~~~~~~p~~Tt~v~~~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (605)
T PRK05841        161 ARDEDIEKLHGNTLSPLQIPQDLTYQPVLSTKVGISVNLNPKDHLKGVQDFFLNDKGEIIKERFLNQDINALANDDNEPI  240 (605)
T ss_pred             CCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             66654321136753431546545458734317868675277655665531002576642222212445432235677755


Q ss_pred             CCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEE-------------------------------CCCCCCCC-
Q ss_conf             5432221036754068873677876213555542047763-------------------------------04444465-
Q gi|254780525|r  187 DAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFR-------------------------------QDQSTNNS-  234 (421)
Q Consensus       187 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~-  234 (421)
T Consensus       241 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (605)
T PRK05841        241 DAITNRKLNISIQKENGKKEDFVFTYGDAEKGENQFKTLGDLQKLLKEKTGLDLNLIKSEKDAKSPPLLLEIANPSQTPI  320 (605)
T ss_pred             CCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEECCHHHHHCCCCCCCEEEECCCCCCCCCCEEEEECCCCCCCE
T ss_conf             66444305688851588720279983366567663032021000001355641012114677776632575037875413


Q ss_pred             ---------------------------------CCC-------CCCCCCC--EE--------------------------
Q ss_conf             ---------------------------------666-------6443210--01--------------------------
Q gi|254780525|r  235 ---------------------------------FPY-------NVAPLNT--VE--------------------------  246 (421)
Q Consensus       235 ---------------------------------~~~-------~~~~~~~--~~--------------------------  246 (421)
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (605)
T PRK05841        321 TFSLSGGIADKLGLNANGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMTNSNDPTSSPTSKRKNQTWEV  400 (605)
T ss_pred             EEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCEEE
T ss_conf             67504531000133566532355654454332344322433775168870465467887036886766643345541034


Q ss_pred             --EEECCCCCCCCC-CCCCCCCCCCCCC---CCCCCCCC-------------CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             --220244564457-7653321246776---65543323-------------3333100233334323344433234434
Q gi|254780525|r  247 --VSFDPVTGYLAN-SSHKAISFNDNTS---GIDQQITI-------------DISKTTQLAGGFIPQKSEINGHAPGKPK  307 (421)
Q Consensus       247 --~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (421)
T Consensus       401 ~s~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~qdG~~~G~L~  480 (605)
T PRK05841        401 KSYIVDPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFKGNKLTYSLDKSENHDSSDLSYQDSKLLEASQDGKPRGIFR  480 (605)
T ss_pred             EEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCEEECCCCCCCCCCCCEEECCCCEEEECCCCCCEEEEE
T ss_conf             33320677753346763013430577776667753550478714651454545555314402320145336880036777


Q ss_pred             CCCCCCCCEEEEEECCCCCCCCCCCEECCCCCHHHHHHCCCCEEEECCC---------CCCEEECCCCCCCC--EEEEEC
Q ss_conf             4554776338998414321101222001217867877416952663233---------58702137888761--146523
Q gi|254780525|r  308 DFSVSKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRD---------SGDISIGFPGHNQH--GEIFSG  376 (421)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~---------sg~~~~~~~~~~~~--~~i~~~  376 (421)
T Consensus       481 ~~~Id~dG~I~g~ysNG~~~~l~qIalA~F~N~~GL~~~G~n~y~~T~~s~~~~~~~~SG~~~~g~~g~G~~~~GsI~~~  560 (605)
T PRK05841        481 DMRIEENGVISLAFSNGVVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKIRHK  560 (605)
T ss_pred             EEEECCCCEEEEEECCCCEEEEEEEEEEEECCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCEECCC
T ss_conf             78989994899998699687889998985368577232269556521255456665677873433577788764316247


Q ss_pred             CEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             100047789999999999999999999999999999999975129
Q gi|254780525|r  377 ALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR  421 (421)
Q Consensus       377 ~le~SgVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl~R  421 (421)
T Consensus       561 aLE~SNVDLa~Eft~mIvtQR~yQANsKvITTsD~mLqelinLKR  605 (605)
T PRK05841        561 YLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK  605 (605)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHCHHHCEEEEEHHHHHHHHHHHCC
T ss_conf             620133058999999999876520541278768999999986259