HHsearch alignment for GI: 254780525 and conserved domain: PRK05841
>PRK05841 flgE flagellar hook protein FlgE; Validated.
Probab=100.00 E-value=0 Score=348.41 Aligned_cols=419 Identities=22% Similarity=0.348 Sum_probs=249.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCC--------CCCCCCCCEEEEEEEEEECCCCE
Q ss_conf 4588999999999999863788775302778671422002465430477--------77631220588578863034111
Q gi|254780525|r 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPST--------SNSYVSGGLEISTKDMISEQGSL 74 (421)
Q Consensus 3 l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~--------~~~~~G~GV~v~~i~r~~~~~~~ 74 (421)
T Consensus 1 m~~SlysGVSGL~a~~~~ldvIgNNIANvnT~GfK~sr~~F~dl~sq~~~~~~~~~~~~~~~g~Gv~~~~~~~~~~qGsl 80 (605)
T PRK05841 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAKSVVANDRNYGVTGSGNVLSNKDGEY 80 (605)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCCE
T ss_conf 91788899999999875442330243416762115553537876654304466777656753566587777887046664
Q ss_pred EECCCHHHHHHCCCCCCCCCCC-C-------------CCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCC
Q ss_conf 2148302211036662010179-8-------------8256420112221236720145562011111013455543234
Q gi|254780525|r 75 MHTASNTDLAIQGKGFFIVKGR-D-------------NVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNS 140 (421)
Q Consensus 75 ~~t~~~~d~a~~~~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 140 (421)
T Consensus 81 ~~T~~~tDlAI~G~GFF~V~~~~~g~~~~~~~g~~~~~~~~YTRaG~F~~D~~G~LV~~~G~~vqG~~~~~~~~g~~~~~ 160 (605)
T PRK05841 81 MPSEGEFHMAYQGKGWFVIGPNKNGEFTINKDGFSKKQDNFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNST 160 (605)
T ss_pred EECCCCCEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEECCCCCEEECCCCCCCCCCCCCCC
T ss_conf 75698404898177179862278874111466556556624723777538999978879988797730465667743455
Q ss_pred C----------CCCCCCCC-CCCCCCCCCCCCEEEEECCCCCCCCCCC-----------------------CCCCCCCCC
Q ss_conf 4----------54444444-4455454333211233102455444444-----------------------444456776
Q gi|254780525|r 141 F----------QGLERINV-KHAELSAMPTTTGFISNNLDKNATIITP-----------------------DKTPKHNGR 186 (421)
Q Consensus 141 ~----------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~ 186 (421)
T Consensus 161 ~~~~~~~~~~~~~~~~~~ip~~~~~~p~~Tt~v~~~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (605)
T PRK05841 161 ARDEDIEKLHGNTLSPLQIPQDLTYQPVLSTKVGISVNLNPKDHLKGVQDFFLNDKGEIIKERFLNQDINALANDDNEPI 240 (605)
T ss_pred CCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 66654321136753431546545458734317868675277655665531002576642222212445432235677755
Q ss_pred CCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEE-------------------------------CCCCCCCC-
Q ss_conf 5432221036754068873677876213555542047763-------------------------------04444465-
Q gi|254780525|r 187 DAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFR-------------------------------QDQSTNNS- 234 (421)
Q Consensus 187 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~- 234 (421)
T Consensus 241 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (605)
T PRK05841 241 DAITNRKLNISIQKENGKKEDFVFTYGDAEKGENQFKTLGDLQKLLKEKTGLDLNLIKSEKDAKSPPLLLEIANPSQTPI 320 (605)
T ss_pred CCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEECCHHHHHCCCCCCCEEEECCCCCCCCCCEEEEECCCCCCCE
T ss_conf 66444305688851588720279983366567663032021000001355641012114677776632575037875413
Q ss_pred ---------------------------------CCC-------CCCCCCC--EE--------------------------
Q ss_conf ---------------------------------666-------6443210--01--------------------------
Q gi|254780525|r 235 ---------------------------------FPY-------NVAPLNT--VE-------------------------- 246 (421)
Q Consensus 235 ---------------------------------~~~-------~~~~~~~--~~-------------------------- 246 (421)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (605)
T PRK05841 321 TFSLSGGIADKLGLNANGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMTNSNDPTSSPTSKRKNQTWEV 400 (605)
T ss_pred EEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCEEE
T ss_conf 67504531000133566532355654454332344322433775168870465467887036886766643345541034
Q ss_pred --EEECCCCCCCCC-CCCCCCCCCCCCC---CCCCCCCC-------------CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf --220244564457-7653321246776---65543323-------------3333100233334323344433234434
Q gi|254780525|r 247 --VSFDPVTGYLAN-SSHKAISFNDNTS---GIDQQITI-------------DISKTTQLAGGFIPQKSEINGHAPGKPK 307 (421)
Q Consensus 247 --~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
T Consensus 401 ~s~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~qdG~~~G~L~ 480 (605)
T PRK05841 401 KSYIVDPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFKGNKLTYSLDKSENHDSSDLSYQDSKLLEASQDGKPRGIFR 480 (605)
T ss_pred EEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCEEECCCCCCCCCCCCEEECCCCEEEECCCCCCEEEEE
T ss_conf 33320677753346763013430577776667753550478714651454545555314402320145336880036777
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCCCEECCCCCHHHHHHCCCCEEEECCC---------CCCEEECCCCCCCC--EEEEEC
Q ss_conf 4554776338998414321101222001217867877416952663233---------58702137888761--146523
Q gi|254780525|r 308 DFSVSKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRD---------SGDISIGFPGHNQH--GEIFSG 376 (421)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~---------sg~~~~~~~~~~~~--~~i~~~ 376 (421)
T Consensus 481 ~~~Id~dG~I~g~ysNG~~~~l~qIalA~F~N~~GL~~~G~n~y~~T~~s~~~~~~~~SG~~~~g~~g~G~~~~GsI~~~ 560 (605)
T PRK05841 481 DMRIEENGVISLAFSNGVVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKIRHK 560 (605)
T ss_pred EEEECCCCEEEEEECCCCEEEEEEEEEEEECCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCEECCC
T ss_conf 78989994899998699687889998985368577232269556521255456665677873433577788764316247
Q ss_pred CEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 100047789999999999999999999999999999999975129
Q gi|254780525|r 377 ALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 377 ~le~SgVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
T Consensus 561 aLE~SNVDLa~Eft~mIvtQR~yQANsKvITTsD~mLqelinLKR 605 (605)
T PRK05841 561 YLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK 605 (605)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCHHHCEEEEEHHHHHHHHHHHCC
T ss_conf 620133058999999999876520541278768999999986259