HHsearch alignment for GI: 254780525 and conserved domain: PRK06799
>PRK06799 flgK flagellar hook-associated protein FlgK; Validated.
Probab=100.00 E-value=0 Score=324.54 Aligned_cols=132 Identities=14% Similarity=0.166 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCC--CCCCCCCCCEEEEEEEEEECCCCEEECCCH
Q ss_conf 458899999999999986378877530277867142200246543047--777631220588578863034111214830
Q gi|254780525|r 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPS--TSNSYVSGGLEISTKDMISEQGSLMHTASN 80 (421)
Q Consensus 3 l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~--~~~~~~G~GV~v~~i~r~~~~~~~~~t~~~ 80 (421)
T Consensus 2 ~~S~~n~a~SGl~A~q~al~vts~NIANanT~GYsRq~v~~~~~~~~~~~~~~~~~G~GV~v~~v~R~~d~~l~~~~~~~ 81 (431)
T PRK06799 2 RLSDYNTPLSGMLAAQMGLQTTQQNLSNIHTPGYVRQMVNYGSVGASGGLLPEQRIGYGVQTLGVDRITDEVKTKQYNDQ 81 (431)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHH
T ss_conf 64245699999999999999887857407998906147220134678777777755578898068871508999999999
Q ss_pred H----------HHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 2----------2110366620101798825642011222123672014556201111101345554
Q gi|254780525|r 81 T----------DLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPL 136 (421)
Q Consensus 81 ~----------d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 136 (421)
T Consensus 82 ~s~~~~~~~~~~~l~~~e~~~~~~~~~--~ls~~l~~ff~a~~~la~~P~~~~~r~~v~~~a~~la 145 (431)
T PRK06799 82 LSQLSYYNYMNSALSRVESMVGTTGKN--SLSSLMDGFFNAFREVAKNPEQANYYDTLISETGKFT 145 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCC--CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 999889999999999999984898888--5789999999999999859687789999999999999