HHsearch alignment for GI: 254780525 and conserved domain: PRK06803
>PRK06803 flgE flagellar hook protein FlgE; Validated.
Probab=100.00 E-value=0 Score=367.19 Aligned_cols=394 Identities=29% Similarity=0.474 Sum_probs=305.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEEECC-CCEEECCC
Q ss_conf 94458899999999999986378877530277867142200246543047777631220588578863034-11121483
Q gi|254780525|r 1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMISEQ-GSLMHTAS 79 (421)
Q Consensus 1 MSl~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~~~~-~~~~~t~~ 79 (421)
T Consensus 1 mS----~~~gvSGl~a~~~~ldvIsNNIANvnT~GfK~s~~~F~dl~~~~~-----~gGv~~~~~~~~~~~~G~l~~T~~ 71 (398)
T PRK06803 1 MS----FNIALSGLNATTQQLNTISNNIANSSTKGFKGSRTEFASIYNGGQ-----AGGVEVSSVSQNFSKGGSLTYTGR 71 (398)
T ss_pred CC----HHHHHHHHHHHHHCCHHHHHHHHHCCCHHCCCCCCCHHHHHCCCC-----CCCEEEEEEEEEEECCCCEEECCC
T ss_conf 96----899999999988564366357775785310756205467547667-----785487677777606887566698
Q ss_pred HHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 02211036662010179882564201122212367201455620111110134555432344544444444455454333
Q gi|254780525|r 80 NTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERINVKHAELSAMPT 159 (421)
Q Consensus 80 ~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (421)
T Consensus 72 ~~DlAI~G~GFF~V~~~~g~~~YTRaG~F~~D~~G~Lv~~~G~~l~G~~~d~~g~~~~~~----~~~i~i~~~~~~~~aT 147 (398)
T PRK06803 72 GLDLAISGGGFFVLKGSDGDTAYTRAGMFRSDVDGYLTDPQGMKLQGYPVDAAGNIQTGN----VSDLQVQTASLPAKAT 147 (398)
T ss_pred CEEEEECCCCEEEEECCCCCEEEECCCEEEEEECCEEEECCCCEEECEEECCCCCCCCCC----CCCEEECCCCCCCCCC
T ss_conf 026998168679997699856675274189933787990899867453606888510266----3203401576686432
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 21123310245544444444445677654322210367540688736778762135555420477630444446566664
Q gi|254780525|r 160 TTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTNNSFPYNV 239 (421)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (421)
T Consensus 148 t~~~~~~nl~a~~~--~~~~~~~~~~~~~~~~~~~~~~vyDs~G~~~~v~~~f~kt~~n~w~~~~~~~~~~~~------- 218 (398)
T PRK06803 148 DQLDFVANLDASVT--DPSVSPFDPTDEKSYNSSTTSTVYDSLGNEHAVTQYFVKTATNEWAVHYTVDGGDVT------- 218 (398)
T ss_pred CEEEEEEECCCCCC--CCCCCCCCCCCCCCEEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEEEECCCCCCC-------
T ss_conf 20678862477666--676565688877630011128998468972578999996589716899975787557-------
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 4321001220244564457765332---1246776655433233333100233334323344433234434455477633
Q gi|254780525|r 240 APLNTVEVSFDPVTGYLANSSHKAI---SFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEINGHAPGKPKDFSVSKDGY 316 (421)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (421)
T Consensus 219 ---~~~~l~F~~~G~l-~~~~~~~~~~~~~~~~~g~~~~~i~l~~~~~tq~~~~~~~~~~~qdG~~~G~l~~~~I~~dG~ 294 (398)
T PRK06803 219 ---PPLTLQFDDTGAL-IPGKGSTINLHDTFNPAGASDYDIDIDYTGSTQYAADFNNSRNKSDGYTSGELNGVRIEDNGM 294 (398)
T ss_pred ---CCEEEEECCCCCC-CCCCCCCEECCCCCCCCCCCCEEEEECCCCCEEECCCCCCEECCCCCEEEEEEEEEEECCCCE
T ss_conf ---7447898788846-457764200144457787664358864776357436654100146875543232379888986
Q ss_pred EEEEECCCCCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHHHHHHHHHHH
Q ss_conf 89984143211012220012178678774169526632335870213788876114652310004778999999999999
Q gi|254780525|r 317 VDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIASELTELIEAQ 396 (421)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDEEm~nLi~~Q 396 (421)
T Consensus 295 I~~~ysNG~~~~lgqIala~F~Np~gL~~~G~n~f~~T~~SG~~~~g~~g~~g~G~i~~gaLE~SNVDla~Eft~mI~tQ 374 (398)
T PRK06803 295 VYATYTNGQEQLQGQVVLANFANPNGLVTVSNTAWSASNKSGQAILGTPGTGTLGSLTSGALEGSNVDITAELVGLMTAQ 374 (398)
T ss_pred EEEEECCCCEEEEEEEEEEEECCHHHCCCCCCCEEECCCCCCCCEECCCCCCCCCEEEECCEEHHHCHHHHHHHHHHHHH
T ss_conf 99995487436776898997338365500479458643467886765799888512832746313140999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999999999997512
Q gi|254780525|r 397 RNYAVNSKVFQTGSDFMDILISLK 420 (421)
Q Consensus 397 ~aYqAsArvItt~demldtLlnl~ 420 (421)
T Consensus 375 R~yqANskvItT~DemlqelvN~v 398 (398)
T PRK06803 375 RNYQANAKVISTNDTMQQALFNAI 398 (398)
T ss_pred HHHHHHCEEEEEHHHHHHHHHHHC
T ss_conf 763564248874899999997409