HHsearch alignment for GI: 254780525 and conserved domain: PRK06803

>PRK06803 flgE flagellar hook protein FlgE; Validated.
Probab=100.00  E-value=0  Score=367.19  Aligned_cols=394  Identities=29%  Similarity=0.474  Sum_probs=305.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEEECC-CCEEECCC
Q ss_conf             94458899999999999986378877530277867142200246543047777631220588578863034-11121483
Q gi|254780525|r    1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMISEQ-GSLMHTAS   79 (421)
Q Consensus         1 MSl~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~~~~-~~~~~t~~   79 (421)
T Consensus         1 mS----~~~gvSGl~a~~~~ldvIsNNIANvnT~GfK~s~~~F~dl~~~~~-----~gGv~~~~~~~~~~~~G~l~~T~~   71 (398)
T PRK06803          1 MS----FNIALSGLNATTQQLNTISNNIANSSTKGFKGSRTEFASIYNGGQ-----AGGVEVSSVSQNFSKGGSLTYTGR   71 (398)
T ss_pred             CC----HHHHHHHHHHHHHCCHHHHHHHHHCCCHHCCCCCCCHHHHHCCCC-----CCCEEEEEEEEEEECCCCEEECCC
T ss_conf             96----899999999988564366357775785310756205467547667-----785487677777606887566698


Q ss_pred             HHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             02211036662010179882564201122212367201455620111110134555432344544444444455454333
Q gi|254780525|r   80 NTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERINVKHAELSAMPT  159 (421)
Q Consensus        80 ~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (421)
T Consensus        72 ~~DlAI~G~GFF~V~~~~g~~~YTRaG~F~~D~~G~Lv~~~G~~l~G~~~d~~g~~~~~~----~~~i~i~~~~~~~~aT  147 (398)
T PRK06803         72 GLDLAISGGGFFVLKGSDGDTAYTRAGMFRSDVDGYLTDPQGMKLQGYPVDAAGNIQTGN----VSDLQVQTASLPAKAT  147 (398)
T ss_pred             CEEEEECCCCEEEEECCCCCEEEECCCEEEEEECCEEEECCCCEEECEEECCCCCCCCCC----CCCEEECCCCCCCCCC
T ss_conf             026998168679997699856675274189933787990899867453606888510266----3203401576686432


Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCC
Q ss_conf             21123310245544444444445677654322210367540688736778762135555420477630444446566664
Q gi|254780525|r  160 TTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTNNSFPYNV  239 (421)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (421)
T Consensus       148 t~~~~~~nl~a~~~--~~~~~~~~~~~~~~~~~~~~~~vyDs~G~~~~v~~~f~kt~~n~w~~~~~~~~~~~~-------  218 (398)
T PRK06803        148 DQLDFVANLDASVT--DPSVSPFDPTDEKSYNSSTTSTVYDSLGNEHAVTQYFVKTATNEWAVHYTVDGGDVT-------  218 (398)
T ss_pred             CEEEEEEECCCCCC--CCCCCCCCCCCCCCEEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEEEECCCCCCC-------
T ss_conf             20678862477666--676565688877630011128998468972578999996589716899975787557-------


Q ss_pred             CCCCCEEEEECCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             4321001220244564457765332---1246776655433233333100233334323344433234434455477633
Q gi|254780525|r  240 APLNTVEVSFDPVTGYLANSSHKAI---SFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEINGHAPGKPKDFSVSKDGY  316 (421)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (421)
T Consensus       219 ---~~~~l~F~~~G~l-~~~~~~~~~~~~~~~~~g~~~~~i~l~~~~~tq~~~~~~~~~~~qdG~~~G~l~~~~I~~dG~  294 (398)
T PRK06803        219 ---PPLTLQFDDTGAL-IPGKGSTINLHDTFNPAGASDYDIDIDYTGSTQYAADFNNSRNKSDGYTSGELNGVRIEDNGM  294 (398)
T ss_pred             ---CCEEEEECCCCCC-CCCCCCCEECCCCCCCCCCCCEEEEECCCCCEEECCCCCCEECCCCCEEEEEEEEEEECCCCE
T ss_conf             ---7447898788846-457764200144457787664358864776357436654100146875543232379888986


Q ss_pred             EEEEECCCCCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHHHHHHHHHHH
Q ss_conf             89984143211012220012178678774169526632335870213788876114652310004778999999999999
Q gi|254780525|r  317 VDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIASELTELIEAQ  396 (421)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDEEm~nLi~~Q  396 (421)
T Consensus       295 I~~~ysNG~~~~lgqIala~F~Np~gL~~~G~n~f~~T~~SG~~~~g~~g~~g~G~i~~gaLE~SNVDla~Eft~mI~tQ  374 (398)
T PRK06803        295 VYATYTNGQEQLQGQVVLANFANPNGLVTVSNTAWSASNKSGQAILGTPGTGTLGSLTSGALEGSNVDITAELVGLMTAQ  374 (398)
T ss_pred             EEEEECCCCEEEEEEEEEEEECCHHHCCCCCCCEEECCCCCCCCEECCCCCCCCCEEEECCEEHHHCHHHHHHHHHHHHH
T ss_conf             99995487436776898997338365500479458643467886765799888512832746313140999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999999999999999997512
Q gi|254780525|r  397 RNYAVNSKVFQTGSDFMDILISLK  420 (421)
Q Consensus       397 ~aYqAsArvItt~demldtLlnl~  420 (421)
T Consensus       375 R~yqANskvItT~DemlqelvN~v  398 (398)
T PRK06803        375 RNYQANAKVISTNDTMQQALFNAI  398 (398)
T ss_pred             HHHHHHCEEEEEHHHHHHHHHHHC
T ss_conf             763564248874899999997409