HHsearch alignment for GI: 254780525 and conserved domain: PRK08425

>PRK08425 flgE flagellar hook protein FlgE; Validated.
Probab=100.00  E-value=0  Score=374.05  Aligned_cols=137  Identities=28%  Similarity=0.448  Sum_probs=127.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECC
Q ss_conf             00233334323344433234434455477633899841432110122200121786787741695266323358702137
Q gi|254780525|r  285 TQLAGGFIPQKSEINGHAPGKPKDFSVSKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGF  364 (421)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~  364 (421)
T Consensus       580 tq~~~~s~~~~~~QdG~~~G~L~~vsI~~dG~I~g~ysNG~~~~l~qIaLA~F~N~~GL~~~G~Nlf~~T~~SG~~~~g~  659 (716)
T PRK08425        580 TSVDKISTTYGIEQDGYTAGDLMDIRFDSDGVLLGAFSNGRTFALAQVALASFANNEGLQAEGGNVFSQTANSGEAVIGA  659 (716)
T ss_pred             EECCCCCCCCEEECCCCCEEEEEEEEECCCCEEEEEECCCCEEEEEEEEEEEECCHHHHHHCCCCEEECCCCCCCCEECC
T ss_conf             12155432100303883205677789899977999985995637789989885685772420696287502478866668


Q ss_pred             CCCCCCEEEEECCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             888761146523100047789999999999999999999999999999999975129
Q gi|254780525|r  365 PGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR  421 (421)
Q Consensus       365 ~~~~~~~~i~~~~le~SgVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl~R  421 (421)
T Consensus       660 ~g~~g~G~I~~~sLE~SNVDLs~Eft~mI~tQRgyQANsKvITTsDemLqelinLKR  716 (716)
T PRK08425        660 AGTGGRGSISASKLEMSNVDLSRSLTQLIVVQRGFQANSKTITTSDQMLNTLLQLKQ  716 (716)
T ss_pred             CCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCHHHCCEEEEHHHHHHHHHHHCC
T ss_conf             886874227547623312159999999999766420304378618999999986469