HHsearch alignment for GI: 254780525 and conserved domain: PRK08425
>PRK08425 flgE flagellar hook protein FlgE; Validated.
Probab=100.00 E-value=0 Score=374.05 Aligned_cols=137 Identities=28% Similarity=0.448 Sum_probs=127.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECC
Q ss_conf 00233334323344433234434455477633899841432110122200121786787741695266323358702137
Q gi|254780525|r 285 TQLAGGFIPQKSEINGHAPGKPKDFSVSKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGF 364 (421)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~ 364 (421)
T Consensus 580 tq~~~~s~~~~~~QdG~~~G~L~~vsI~~dG~I~g~ysNG~~~~l~qIaLA~F~N~~GL~~~G~Nlf~~T~~SG~~~~g~ 659 (716)
T PRK08425 580 TSVDKISTTYGIEQDGYTAGDLMDIRFDSDGVLLGAFSNGRTFALAQVALASFANNEGLQAEGGNVFSQTANSGEAVIGA 659 (716)
T ss_pred EECCCCCCCCEEECCCCCEEEEEEEEECCCCEEEEEECCCCEEEEEEEEEEEECCHHHHHHCCCCEEECCCCCCCCEECC
T ss_conf 12155432100303883205677789899977999985995637789989885685772420696287502478866668
Q ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 888761146523100047789999999999999999999999999999999975129
Q gi|254780525|r 365 PGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 365 ~~~~~~~~i~~~~le~SgVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
T Consensus 660 ~g~~g~G~I~~~sLE~SNVDLs~Eft~mI~tQRgyQANsKvITTsDemLqelinLKR 716 (716)
T PRK08425 660 AGTGGRGSISASKLEMSNVDLSRSLTQLIVVQRGFQANSKTITTSDQMLNTLLQLKQ 716 (716)
T ss_pred CCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCHHHCCEEEEHHHHHHHHHHHCC
T ss_conf 886874227547623312159999999999766420304378618999999986469