HHsearch alignment for GI: 254780525 and conserved domain: PRK12636
>PRK12636 flgG flagellar basal body rod protein FlgG; Provisional.
Probab=100.00 E-value=9.9e-40 Score=270.83 Aligned_cols=250 Identities=36% Similarity=0.583 Sum_probs=211.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCC-------------CCCCCCCCCEEEEEEEEEE
Q ss_conf 458899999999999986378877530277867142200246543047-------------7776312205885788630
Q gi|254780525|r 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPS-------------TSNSYVSGGLEISTKDMIS 69 (421)
Q Consensus 3 l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~-------------~~~~~~G~GV~v~~i~r~~ 69 (421)
T Consensus 1 M~r~lYta~sgm~a~~~~ldviaNNlANvnT~GfK~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~ 80 (263)
T PRK12636 1 MLRSMYSGISGMKNFQTKLDVIGNNIANVNTVGYKKSRVTFKDMVSQTISGASGPTANRGGVNSKQVGLGSTLGSIDTIH 80 (263)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEECCEEEEEEEEEC
T ss_conf 96589999999999999788998999877765448472318999887631467766566776651230212542467542
Q ss_pred CCCCEEECCCHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 34111214830221103666201017988256420112221236720145562011111013455543234454444444
Q gi|254780525|r 70 EQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERINV 149 (421)
Q Consensus 70 ~~~~~~~t~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (421)
T Consensus 81 ~qG~l~~Tg~~lDlAI~G~GfF~V~~~~-g~~yTR~G~F~~d~~G~Lvt~~G~~Vl~~~--------------------- 138 (263)
T PRK12636 81 TQGSLQTTGRPLDLAISGDGYFRVGSGD-ETYYTRAGNFYLDNEGNLVNADGLYLLGMN--------------------- 138 (263)
T ss_pred CCCCEEECCCCCEEEECCCCEEEECCCC-CEEEEEECCEEECCCCCEECCCCCEEECCC---------------------
T ss_conf 7877143698211898588778874999-747997045889899888869999806899---------------------
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECCC
Q ss_conf 44554543332112331024554444444444567765432221036754068873677876213555542047763044
Q gi|254780525|r 150 KHAELSAMPTTTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQ 229 (421)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (421)
T Consensus 139 -----------------------------------------------------g~pI~i--------------------- 144 (263)
T PRK12636 139 -----------------------------------------------------GGRINI--------------------- 144 (263)
T ss_pred -----------------------------------------------------CCCCCC---------------------
T ss_conf -----------------------------------------------------987646---------------------
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44465666644321001220244564457765332124677665543323333310023333432334443323443445
Q gi|254780525|r 230 STNNSFPYNVAPLNTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEINGHAPGKPKDF 309 (421)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
T Consensus 145 ------p-------------------------------------------------------------------~~~~~~ 151 (263)
T PRK12636 145 ------P-------------------------------------------------------------------TDAQSF 151 (263)
T ss_pred ------C-------------------------------------------------------------------CCCCEE
T ss_conf ------8-------------------------------------------------------------------887258
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHHHH
Q ss_conf 54776338998414321101222001217867877416952663233587021378887611465231000477899999
Q gi|254780525|r 310 SVSKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIASEL 389 (421)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDEEm 389 (421)
T Consensus 152 ~I~~dG~i~~~~~~g~~~~vg~l~l~~f~~~~~L~~~G~~lf~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVn~~~Em 231 (263)
T PRK12636 152 SIGPDGTVSYVDANGENQTAGQIGLATFANPSGLEKAGNNLYRETLNSGAPQVVVPGEGGTGKIQSGALEMSNVDLSEEF 231 (263)
T ss_pred EECCCCEEEEECCCCCCEEEEEEEEEECCCHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCEEECCCEECCCCCHHHHH
T ss_conf 87588528896079950367898999516868730058963751366777554677878764160384761347599999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999999999999999975129
Q gi|254780525|r 390 TELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 390 ~nLi~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
T Consensus 232 v~mI~~qRaye~n~K~i~~~De~~~~~~nl~R 263 (263)
T PRK12636 232 TEMIVAQRGFQANTRIITTSDEILQELVNLKR 263 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999998899999999999997459