HHsearch alignment for GI: 254780525 and conserved domain: PRK12637
>PRK12637 flgE flagellar hook protein FlgE; Provisional.
Probab=100.00 E-value=0 Score=345.13 Aligned_cols=395 Identities=28% Similarity=0.435 Sum_probs=270.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCHHHHHHC
Q ss_conf 99999999999986378877530277867142200246543047777631220588578863034111214830221103
Q gi|254780525|r 7 MKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMISEQGSLMHTASNTDLAIQ 86 (421)
Q Consensus 7 l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~~~~~~~~~t~~~~d~a~~ 86 (421)
T Consensus 3 ~~~GvsGl~a~~~~l~vi~nNiAN~~T~gfK~~~~~F~~~~~~----~~~g~g~~~~~~~~~~~~G~~~~t~~~~d~ai~ 78 (473)
T PRK12637 3 FGQGLSGLNAASQNLDVIGNNIANSGTVGFKSGAASFADVYAS----SRVGLGVKVSAINQRFTVGNISTTGGEYDMAID 78 (473)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHCC----CCCCCCEEEEEEEEEECCCCEEECCCCCEEEEE
T ss_conf 7789999999885532551476737760008566716675455----876673476478988256780667983438894
Q ss_pred -CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf -6662010179882564201122212367201455620111110134555432344544444444455454333211233
Q gi|254780525|r 87 -GKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERINVKHAELSAMPTTTGFIS 165 (421)
Q Consensus 87 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (421)
T Consensus 79 ~g~GfF~v~~~~~~~~yTR~G~F~~d~~g~lv~~~G~~lqG~~~~~~g~~~~~i~l~~--------~~~~p~aTt~~~~~ 150 (473)
T PRK12637 79 GGKGFFRLTDQSGGVFYSRNGEFMVDKNFYIVNAQGFRLTGYPAGGVGAQPVDLQLPQ--------GNIAPQATSTAGLQ 150 (473)
T ss_pred CCCEEEEEECCCCCEEEECCCCEEECCCCEEECCCCCEEECCCCCCCCCCEEEEECCC--------CCCCCCCCEEEEEE
T ss_conf 6970799973899667743642668799709858998877644677887401135467--------77587432058788
Q ss_pred ECCCCCCCCCC-------------------------------------------------------------------CC
Q ss_conf 10245544444-------------------------------------------------------------------44
Q gi|254780525|r 166 NNLDKNATIIT-------------------------------------------------------------------PD 178 (421)
Q Consensus 166 ~~~~~~~~~~~-------------------------------------------------------------------~~ 178 (421)
T Consensus 151 ~NL~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 230 (473)
T PRK12637 151 TNLNANAKVIDPNDTPAVDGTVELDGTTYRFTNAGGTFAWVAPAPLDGTYNGGDIVIAGGAVTGDLASQPGYQPYKPLVA 230 (473)
T ss_pred EECCCCCCCCCCCCCCCCCCCEECCCCEEEEECCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 84067764447766645465010145125762367602220123335643455202205520133235666544332123
Q ss_pred CCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCC----CEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 44456776543222103675406887367787621355554----20477630444446566664432100122024456
Q gi|254780525|r 179 KTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKK----WEVSIFRQDQSTNNSFPYNVAPLNTVEVSFDPVTG 254 (421)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (421)
T Consensus 231 ~~~~d~t~~~~~~~~~~~~v~ds~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~------~~~~~~~~~~tl~fd~~g~ 304 (473)
T PRK12637 231 GIPFDPTNPLSYTDQVPTTVYDSLGNSHQMIQYFAKRPAVGTESVYEVYYVLDGQ------PMQVNGGASQTLNFDTAGN 304 (473)
T ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCC------CCCCCCCCCEEEEECCCCC
T ss_conf 5656877775313443069882689825789998614677877436899953787------3123577630588658885
Q ss_pred CCCCCCCCCCCCC-CCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 4457765332124-6776---65543323333310023333432334443323443445547763389984143211012
Q gi|254780525|r 255 YLANSSHKAISFN-DNTS---GIDQQITIDISKTTQLAGGFIPQKSEINGHAPGKPKDFSVSKDGYVDIIYDDGTRVPIY 330 (421)
Q Consensus 255 ~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (421)
T Consensus 305 l~~~~~~~~~t~~~~~~~~~~~~~~~it~~~~g~Tq~~s~~~-~~~~qdG~~~G~L~~~~Id~dG~I~g~ySNG~t~~l~ 383 (473)
T PRK12637 305 LLNQPPTAQVTFANPGGNAAPADPLAITVSYNGVTQYGSDFA-PKVVQNGYSSGEFMGLSVGKDGSLVAKYTNGETQTIG 383 (473)
T ss_pred CCCCCCCCEEEEECCCCCCCCCCCEEEEECCCCEEEECCCCC-CEECCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEE
T ss_conf 147887421576257877676776048872665167546665-1230278445415688989994899998799598988
Q ss_pred CCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22001217867877416952663233587021378887611465231000477899999999999999999999999999
Q gi|254780525|r 331 RLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVNSKVFQTGS 410 (421)
Q Consensus 331 ~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDEEm~nLi~~Q~aYqAsArvItt~d 410 (421)
T Consensus 384 qIaLA~F~Np~GL~~~G~n~y~~T~~SG~~~~g~ag~gg~G~I~~gaLE~SNVDLa~Eft~mIvtQR~yQANSKvItTsD 463 (473)
T PRK12637 384 TLVLANFNNVQGLQPVGNNAWVETSESGQATLGQPGTNGLATIAGQALEASNVDMSRELVNMIVAQRTYQANAQTIKTQD 463 (473)
T ss_pred EEEEEEECCHHHCEECCCCEEECCCCCCCCEECCCCCCCCCEEEECCEEHHHHHHHHHHHHHHHHHHHHHHHCEEEEEHH
T ss_conf 99999616958660137963872013788557579988862172175402440799999999998765014325887589
Q ss_pred HHHHHHHHHC
Q ss_conf 9999997512
Q gi|254780525|r 411 DFMDILISLK 420 (421)
Q Consensus 411 emldtLlnl~ 420 (421)
T Consensus 464 emLqelinLK 473 (473)
T PRK12637 464 EVMQVLMNMR 473 (473)
T ss_pred HHHHHHHHCC
T ss_conf 9999997059