HHsearch alignment for GI: 254780525 and conserved domain: PRK12640
>PRK12640 flgF flagellar basal body rod protein FlgF; Reviewed.
Probab=100.00 E-value=2.5e-31 Score=217.31 Aligned_cols=121 Identities=23% Similarity=0.287 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCHHH
Q ss_conf 45889999999999998637887753027786714220024654304777763122058857886303411121483022
Q gi|254780525|r 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMISEQGSLMHTASNTD 82 (421)
Q Consensus 3 l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~~~~~~~~~t~~~~d 82 (421)
T Consensus 1 M~r~ly~a~sgm~a~q~~ldvisNNlANvnT~GfK~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~qG~l~~Tg~~lD 79 (246)
T PRK12640 1 MDKALYTAMSGASQNLNQQAVHANNLANASTPGFRADLAQARAVPVFGEGL-PTRVFALASTPGADFTPGPIQTTGRPLD 79 (246)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCHHHHHHHHCCCCCC-CCCEEEEECCCCEEECCCCEEECCCCCE
T ss_conf 914899999999999985788988888677776601456454002248777-7303675034411417887355698330
Q ss_pred HHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf 110366620101798825642011222123672014556201
Q gi|254780525|r 83 LAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVL 124 (421)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 124 (421)
T Consensus 80 lAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G~Lvt~~G~~V 121 (246)
T PRK12640 80 VALQGDGWLAVQAPDGSEAYTRNGSLQVDANGQLVTANGLPV 121 (246)
T ss_pred EEECCCCEEEEECCCCCEEEEECCCEEECCCCCEEECCCCEE
T ss_conf 887699579998799854257756289999998892789896