HHsearch alignment for GI: 254780525 and conserved domain: PRK12640

>PRK12640 flgF flagellar basal body rod protein FlgF; Reviewed.
Probab=100.00  E-value=2.5e-31  Score=217.31  Aligned_cols=121  Identities=23%  Similarity=0.287  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCHHH
Q ss_conf             45889999999999998637887753027786714220024654304777763122058857886303411121483022
Q gi|254780525|r    3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMISEQGSLMHTASNTD   82 (421)
Q Consensus         3 l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~~~~~~~~~t~~~~d   82 (421)
T Consensus         1 M~r~ly~a~sgm~a~q~~ldvisNNlANvnT~GfK~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~qG~l~~Tg~~lD   79 (246)
T PRK12640          1 MDKALYTAMSGASQNLNQQAVHANNLANASTPGFRADLAQARAVPVFGEGL-PTRVFALASTPGADFTPGPIQTTGRPLD   79 (246)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCHHHHHHHHCCCCCC-CCCEEEEECCCCEEECCCCEEECCCCCE
T ss_conf             914899999999999985788988888677776601456454002248777-7303675034411417887355698330


Q ss_pred             HHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf             110366620101798825642011222123672014556201
Q gi|254780525|r   83 LAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVL  124 (421)
Q Consensus        83 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  124 (421)
T Consensus        80 lAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G~Lvt~~G~~V  121 (246)
T PRK12640         80 VALQGDGWLAVQAPDGSEAYTRNGSLQVDANGQLVTANGLPV  121 (246)
T ss_pred             EEECCCCEEEEECCCCCEEEEECCCEEECCCCCEEECCCCEE
T ss_conf             887699579998799854257756289999998892789896