HHsearch alignment for GI: 254780525 and conserved domain: PRK12643
>PRK12643 flgF flagellar basal body rod protein FlgF; Reviewed.
Probab=99.64 E-value=4e-16 Score=120.40 Aligned_cols=121 Identities=23% Similarity=0.326 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCHHH
Q ss_conf 45889999999999998637887753027786714220024654304777763122058857886303411121483022
Q gi|254780525|r 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMISEQGSLMHTASNTD 82 (421)
Q Consensus 3 l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~~~~~~~~~t~~~~d 82 (421)
T Consensus 1 Mdr~iYtA~sg~~~~~~~~~viaNNLANvnT~GFK~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~d~~qG~l~~Tg~~LD 79 (209)
T PRK12643 1 MDHAIYTAMGAARQSLELQAVTANNLANASTPGFRAQLAAMRAVPIDGPS-LATRTMVTTSTPGVDISQGTMNFSGRPLD 79 (209)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHCCCCCCCC-CCCCCEEEECCCCEECCCCCEEECCCCEE
T ss_conf 92689999999999999888998887747876443104534231224777-65331133046504616757351598303
Q ss_pred HHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHH
Q ss_conf 1103666201017988256420112221236720145562011
Q gi|254780525|r 83 LAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLL 125 (421)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 125 (421)
T Consensus 80 lAI~G~GfF~V~~~~G~~aYTR~G~f~vd~~G~L-t~~G~~Vl 121 (209)
T PRK12643 80 VALQQDGYLAVQLPDGSEAYTRNGNIQISANGQM-TVQGYPLM 121 (209)
T ss_pred EEEECCCEEEEECCCCCEEEEECCCEEECCCCCE-EECCCEEE
T ss_conf 9980895899985899567887887159999879-76985821