HHsearch alignment for GI: 254780525 and conserved domain: PRK12693
>PRK12693 flgG flagellar basal body rod protein FlgG; Provisional.
Probab=100.00 E-value=1.2e-38 Score=263.95 Aligned_cols=246 Identities=31% Similarity=0.496 Sum_probs=200.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCC--------------CCCCCCCCEEEEEEEEE
Q ss_conf 4588999999999999863788775302778671422002465430477--------------77631220588578863
Q gi|254780525|r 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPST--------------SNSYVSGGLEISTKDMI 68 (421)
Q Consensus 3 l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~--------------~~~~~G~GV~v~~i~r~ 68 (421)
T Consensus 1 M~r~lYta~sGm~a~~~~l~viaNNlANvnT~GfK~~~~~F~~~l~~~~~~~g~~~~~~~~~p~~~~~g~gv~~~~~~~~ 80 (261)
T PRK12693 1 MIRALWIAKTGLDAQQTNIDVISNNLANVNTTGFKKSRAVFEDLLYQTIRQPGAQSSQNTTLPSGLQVGTGVRPVATQKI 80 (261)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCEEECCCEEE
T ss_conf 96589999999999997457888888877764338574729999987640367766655557765300231230222122
Q ss_pred ECCCCEEECCCHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 03411121483022110366620101798825642011222123672014556201111101345554323445444444
Q gi|254780525|r 69 SEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERIN 148 (421)
Q Consensus 69 ~~~~~~~~t~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (421)
T Consensus 81 fsqG~l~~Tg~~lDlAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G~Lvt~~G~~vl~---------------------- 138 (261)
T PRK12693 81 FTQGNLQQTGNSLDVAIEGQGFFQVQLPDGTIAYTRDGSFKLDQDGQLVTSGGYPLQP---------------------- 138 (261)
T ss_pred CCCCCEEECCCCEEEEECCCCEEEEECCCCCEEEEECCCEEECCCCCEEECCCCEEEE----------------------
T ss_conf 1577503069820399848807999758984647744436898997589089988665----------------------
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECC
Q ss_conf 44455454333211233102455444444444456776543222103675406887367787621355554204776304
Q gi|254780525|r 149 VKHAELSAMPTTTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQD 228 (421)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (421)
T Consensus 139 --------------~i--------~i------------------------------------------------------ 142 (261)
T PRK12693 139 --------------EI--------TI------------------------------------------------------ 142 (261)
T ss_pred --------------EE--------EC------------------------------------------------------
T ss_conf --------------31--------03------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44446566664432100122024456445776533212467766554332333331002333343233444332344344
Q gi|254780525|r 229 QSTNNSFPYNVAPLNTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEINGHAPGKPKD 308 (421)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
T Consensus 143 -------p~-------------------------------------------------------------------~~~~ 148 (261)
T PRK12693 143 -------PE-------------------------------------------------------------------NATS 148 (261)
T ss_pred -------CC-------------------------------------------------------------------CCCE
T ss_conf -------89-------------------------------------------------------------------9840
Q ss_pred CCCCCCCEEEEEEC-CCCCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHH
Q ss_conf 55477633899841-43211012220012178678774169526632335870213788876114652310004778999
Q gi|254780525|r 309 FSVSKDGYVDIIYD-DGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIAS 387 (421)
Q Consensus 309 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDE 387 (421)
T Consensus 149 i~i~~dG~i~~~~~g~~~~~~ig~l~l~~f~~~~~L~~~G~nlf~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~ 228 (261)
T PRK12693 149 ITIGTDGTVSVTQAGQAAPQVVGQITLTDFINPAGLESIGENLYLETAASGAPVEGTPGLNGLGTLRQGFLETSNVNVVE 228 (261)
T ss_pred EEECCCCEEEEEECCCCCCEEEEEEEEEEECCHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCEECCCCCHHH
T ss_conf 47789987999857987624777999996148145331488506534777785336788787225853856544466999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999999999999999999997512
Q gi|254780525|r 388 ELTELIEAQRNYAVNSKVFQTGSDFMDILISLK 420 (421)
Q Consensus 388 Em~nLi~~Q~aYqAsArvItt~demldtLlnl~ 420 (421)
T Consensus 229 Em~~mI~~qR~ye~n~K~i~t~De~l~~~~nll 261 (261)
T PRK12693 229 ELVNMITGQRAYEMNSKAISTADQMLQYVNQLL 261 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999789999999999998629