HHsearch alignment for GI: 254780525 and conserved domain: PRK12693

>PRK12693 flgG flagellar basal body rod protein FlgG; Provisional.
Probab=100.00  E-value=1.2e-38  Score=263.95  Aligned_cols=246  Identities=31%  Similarity=0.496  Sum_probs=200.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCC--------------CCCCCCCCEEEEEEEEE
Q ss_conf             4588999999999999863788775302778671422002465430477--------------77631220588578863
Q gi|254780525|r    3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPST--------------SNSYVSGGLEISTKDMI   68 (421)
Q Consensus         3 l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~--------------~~~~~G~GV~v~~i~r~   68 (421)
T Consensus         1 M~r~lYta~sGm~a~~~~l~viaNNlANvnT~GfK~~~~~F~~~l~~~~~~~g~~~~~~~~~p~~~~~g~gv~~~~~~~~   80 (261)
T PRK12693          1 MIRALWIAKTGLDAQQTNIDVISNNLANVNTTGFKKSRAVFEDLLYQTIRQPGAQSSQNTTLPSGLQVGTGVRPVATQKI   80 (261)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCEEECCCEEE
T ss_conf             96589999999999997457888888877764338574729999987640367766655557765300231230222122


Q ss_pred             ECCCCEEECCCHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             03411121483022110366620101798825642011222123672014556201111101345554323445444444
Q gi|254780525|r   69 SEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERIN  148 (421)
Q Consensus        69 ~~~~~~~~t~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (421)
T Consensus        81 fsqG~l~~Tg~~lDlAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G~Lvt~~G~~vl~----------------------  138 (261)
T PRK12693         81 FTQGNLQQTGNSLDVAIEGQGFFQVQLPDGTIAYTRDGSFKLDQDGQLVTSGGYPLQP----------------------  138 (261)
T ss_pred             CCCCCEEECCCCEEEEECCCCEEEEECCCCCEEEEECCCEEECCCCCEEECCCCEEEE----------------------
T ss_conf             1577503069820399848807999758984647744436898997589089988665----------------------


Q ss_pred             CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECC
Q ss_conf             44455454333211233102455444444444456776543222103675406887367787621355554204776304
Q gi|254780525|r  149 VKHAELSAMPTTTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQD  228 (421)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  228 (421)
T Consensus       139 --------------~i--------~i------------------------------------------------------  142 (261)
T PRK12693        139 --------------EI--------TI------------------------------------------------------  142 (261)
T ss_pred             --------------EE--------EC------------------------------------------------------
T ss_conf             --------------31--------03------------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             44446566664432100122024456445776533212467766554332333331002333343233444332344344
Q gi|254780525|r  229 QSTNNSFPYNVAPLNTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEINGHAPGKPKD  308 (421)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (421)
T Consensus       143 -------p~-------------------------------------------------------------------~~~~  148 (261)
T PRK12693        143 -------PE-------------------------------------------------------------------NATS  148 (261)
T ss_pred             -------CC-------------------------------------------------------------------CCCE
T ss_conf             -------89-------------------------------------------------------------------9840


Q ss_pred             CCCCCCCEEEEEEC-CCCCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHH
Q ss_conf             55477633899841-43211012220012178678774169526632335870213788876114652310004778999
Q gi|254780525|r  309 FSVSKDGYVDIIYD-DGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIAS  387 (421)
Q Consensus       309 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDE  387 (421)
T Consensus       149 i~i~~dG~i~~~~~g~~~~~~ig~l~l~~f~~~~~L~~~G~nlf~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~  228 (261)
T PRK12693        149 ITIGTDGTVSVTQAGQAAPQVVGQITLTDFINPAGLESIGENLYLETAASGAPVEGTPGLNGLGTLRQGFLETSNVNVVE  228 (261)
T ss_pred             EEECCCCEEEEEECCCCCCEEEEEEEEEEECCHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCEECCCCCHHH
T ss_conf             47789987999857987624777999996148145331488506534777785336788787225853856544466999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999999999999999999999999997512
Q gi|254780525|r  388 ELTELIEAQRNYAVNSKVFQTGSDFMDILISLK  420 (421)
Q Consensus       388 Em~nLi~~Q~aYqAsArvItt~demldtLlnl~  420 (421)
T Consensus       229 Em~~mI~~qR~ye~n~K~i~t~De~l~~~~nll  261 (261)
T PRK12693        229 ELVNMITGQRAYEMNSKAISTADQMLQYVNQLL  261 (261)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999999999999789999999999998629