HHsearch alignment for GI: 254780525 and conserved domain: PRK12816
>PRK12816 flgG flagellar basal body rod protein FlgG; Reviewed.
Probab=100.00 E-value=9.9e-39 Score=264.45 Aligned_cols=249 Identities=32% Similarity=0.493 Sum_probs=200.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCC--------------CCCCCCCCEEEEEEEEE
Q ss_conf 4588999999999999863788775302778671422002465430477--------------77631220588578863
Q gi|254780525|r 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPST--------------SNSYVSGGLEISTKDMI 68 (421)
Q Consensus 3 l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~--------------~~~~~G~GV~v~~i~r~ 68 (421)
T Consensus 1 M~r~lyta~sGm~a~q~~ldviaNNlANvnT~GfK~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~ 80 (264)
T PRK12816 1 MMRSLWTAATGMIAQQYNIDTIANNLANVNTTGFKKIRAEFEDLIYQTQVRAGTPATEDTLIPLGVQVGHGVKVAATQRL 80 (264)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCEEE
T ss_conf 95489999999999998578898999877666558574718999887652158876555546666432442562221355
Q ss_pred ECCCCEEECCCHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 03411121483022110366620101798825642011222123672014556201111101345554323445444444
Q gi|254780525|r 69 SEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERIN 148 (421)
Q Consensus 69 ~~~~~~~~t~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (421)
T Consensus 81 f~qG~l~~Tg~~lDlAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G~Lvt~~G~~Vl~~--------------------- 139 (264)
T PRK12816 81 FEQGSLQATGLKTDVAIEGEGFFKILLPDGTYAYTRDGSFKIDSNRQLVTSNGYLLLPE--------------------- 139 (264)
T ss_pred CCCCCCEECCCCEEEEECCCCEEEEECCCCCEEEEECCCEEECCCCCEEECCCCCCCCC---------------------
T ss_conf 16888540698203898489489997379956388755478999988890999892787---------------------
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECC
Q ss_conf 44455454333211233102455444444444456776543222103675406887367787621355554204776304
Q gi|254780525|r 149 VKHAELSAMPTTTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQD 228 (421)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (421)
T Consensus 140 ---------------i----------~~----------P~~~~~------------------------------------ 148 (264)
T PRK12816 140 ---------------I----------IF----------PEEYIL------------------------------------ 148 (264)
T ss_pred ---------------C----------CC----------CCCCCC------------------------------------
T ss_conf ---------------5----------38----------987555------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44446566664432100122024456445776533212467766554332333331002333343233444332344344
Q gi|254780525|r 229 QSTNNSFPYNVAPLNTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEINGHAPGKPKD 308 (421)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
T Consensus 149 ------------------------------------------------------------------------------~~ 150 (264)
T PRK12816 149 ------------------------------------------------------------------------------NS 150 (264)
T ss_pred ------------------------------------------------------------------------------CC
T ss_conf ------------------------------------------------------------------------------64
Q ss_pred CCCCCCCEEEEEEC-CCCCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHH
Q ss_conf 55477633899841-43211012220012178678774169526632335870213788876114652310004778999
Q gi|254780525|r 309 FSVSKDGYVDIIYD-DGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIAS 387 (421)
Q Consensus 309 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDE 387 (421)
T Consensus 151 i~i~~dG~i~~~~~~~~~~~~vg~l~l~~~~np~~L~~~G~nl~~~~~~~g~~~~~~p~~~~~~~v~qG~LE~SNV~~~~ 230 (264)
T PRK12816 151 IMISEEGIVTVKVGEDIEPIELGQIELYRFVNPAGLQAIGKNLFKETVASGQEIPGTPGSEGMGKVLQGFLEMSNVSIVE 230 (264)
T ss_pred EEECCCCEEEEECCCCCCCEEEEEEEEEEECCHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCEEEECCCEECCCCCHHH
T ss_conf 48878984999538987741556778987227044331378520026667775557778787205832847622365999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999999999999999999975129
Q gi|254780525|r 388 ELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 388 Em~nLi~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
T Consensus 231 EMv~mI~~qR~fe~~~K~i~t~De~~~~~~nl~R 264 (264)
T PRK12816 231 EMVTMIVAQRAYEINSKAIQTSDNMLGTANNLKR 264 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999999999999999999986269