HHsearch alignment for GI: 254780525 and conserved domain: PRK12817
>PRK12817 flgG flagellar basal body rod protein FlgG; Reviewed.
Probab=100.00 E-value=1.2e-36 Score=251.24 Aligned_cols=251 Identities=29% Similarity=0.481 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCC----------CCCCCCCCCEEEEEEEEEECCC
Q ss_conf 458899999999999986378877530277867142200246543047----------7776312205885788630341
Q gi|254780525|r 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPS----------TSNSYVSGGLEISTKDMISEQG 72 (421)
Q Consensus 3 l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~----------~~~~~~G~GV~v~~i~r~~~~~ 72 (421)
T Consensus 1 M~rglYta~sgm~a~q~~ldvisNNlANvnT~GfK~~~~~F~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~~~~qG 80 (261)
T PRK12817 1 MLRALWNSKSGMNAQQEKLDSISNNLANVNTTGYKREDVSFQDLVQETLDRKGYPVNDRKNIITGTGVKATNWIRDNQQG 80 (261)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC
T ss_conf 95689999999999998678998889877774437471128999987622467665678764003338740247654887
Q ss_pred CEEECCCHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11214830221103666201017988256420112221236720145562011111013455543234454444444445
Q gi|254780525|r 73 SLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERINVKHA 152 (421)
Q Consensus 73 ~~~~t~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (421)
T Consensus 81 ~l~~Tg~~lDlAI~G~GfF~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~v~~~~------------------------ 136 (261)
T PRK12817 81 NLLTTGNKTDLAIDGEGFFRVIMPDGTYAYTRAGNFNIDSNGMLVDENGNRLEIQY------------------------ 136 (261)
T ss_pred CEEECCCCCEEEECCCCEEEEECCCCCEEEEECCCEEECCCCCEECCCCCEECCCC------------------------
T ss_conf 83536984238985884799983899676886886479999998989998821456------------------------
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECCCCCC
Q ss_conf 54543332112331024554444444444567765432221036754068873677876213555542047763044444
Q gi|254780525|r 153 ELSAMPTTTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTN 232 (421)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (421)
T Consensus 137 -----------------------------------------------~~~~-----------~--~-------------- 142 (261)
T PRK12817 137 -----------------------------------------------QPEG-----------V--G-------------- 142 (261)
T ss_pred -----------------------------------------------CCCC-----------C--C--------------
T ss_conf -----------------------------------------------6766-----------6--6--------------
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 65666644321001220244564457765332124677665543323333310023333432334443323443445547
Q gi|254780525|r 233 NSFPYNVAPLNTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEINGHAPGKPKDFSVS 312 (421)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (421)
T Consensus 143 --~~--------------------------------------------------------------~~~~~~~~~~i~i~ 158 (261)
T PRK12817 143 --IL--------------------------------------------------------------NRNGGFDSNNINIA 158 (261)
T ss_pred --CC--------------------------------------------------------------CCCCCCCCCEEEEC
T ss_conf --67--------------------------------------------------------------77777777628989
Q ss_pred CCCEEEEEECCCCCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHHHHHHH
Q ss_conf 76338998414321101222001217867877416952663233587021378887611465231000477899999999
Q gi|254780525|r 313 KDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIASELTEL 392 (421)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDEEm~nL 392 (421)
T Consensus 159 ~dG~i~~~~~~~~~~~vg~l~l~~~~~~~~L~~~G~~l~~~~~~~~~~------~~~~~~v~qG~LE~SNV~~~~EMv~l 232 (261)
T PRK12817 159 EDGSISVKDVDGQNKKVGKINIYNAVGDDAFISIGDNLYVPSDGAQVF------LNNDVSILQGYLENSNVDLGKEMTDM 232 (261)
T ss_pred CCCEEEEECCCCCEEEEEEEEEECCCCCHHCEECCCCEEEECCCCCCC------CCCCCEEECCCEEHHCCCHHHHHHHH
T ss_conf 996699823898617878888861378054367589558707888777------68886186485211217399999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999999999999975129
Q gi|254780525|r 393 IEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 393 i~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
T Consensus 233 i~~qRaye~n~k~i~t~Dem~~~~nnlrr 261 (261)
T PRK12817 233 IITQRAFQLSSKGIKTADEMWGIINNMRK 261 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999998999999999999986179