HHsearch alignment for GI: 254780525 and conserved domain: TIGR02488

>TIGR02488 flgG_G_neg flagellar basal-body rod protein FlgG; InterPro: IPR012834 This family consists of the FlgG protein of the flagellar apparatus in the proteobacteria and spirochetes. The basal body constitutes a major portion of the flagellar organelle and consists of four rings (L,P,S, and M) mounted on a central rod . The rod consists of about 26 subunits of flgG in the distal portion, and flgB, flgC and flgF are thought to build up the proximal portion of the rod with about 6 subunits each.; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0009426 flagellin-based flagellum basal body distal rod.
Probab=100.00  E-value=0  Score=315.27  Aligned_cols=243  Identities=32%  Similarity=0.509  Sum_probs=213.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCC---------------CCCCCCCEEEEEEEEEEC
Q ss_conf             89999999999998637887753027786714220024654304777---------------763122058857886303
Q gi|254780525|r    6 SMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTS---------------NSYVSGGLEISTKDMISE   70 (421)
Q Consensus         6 ~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~---------------~~~~G~GV~v~~i~r~~~   70 (421)
T Consensus         1 aL~tAaTGM~AQQtn~~VIsNNLANVnT~GFKk~RA~FEDL~YQ~~r~pG~q~~~~~t~~P~G~~~G~GVr~~at~k~~~   80 (263)
T TIGR02488         1 ALWTAATGMNAQQTNMDVISNNLANVNTTGFKKDRAEFEDLLYQTVRQPGAQSSEQQTILPVGVQVGLGVRVVATQKLFT   80 (263)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCEEECCCEEEEEEEEEEE
T ss_conf             93033655888735788877633110234412123676557477312588887776300346624358504235766641


Q ss_pred             CCCEEECCCHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC---CCCCHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             4111214830221103666201017988256420112221236720145---5620111110134555432344544444
Q gi|254780525|r   71 QGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENV---AGGVLLGYPLKNASAPLIVNSFQGLERI  147 (421)
Q Consensus        71 ~~~~~~t~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (421)
T Consensus        81 QG~lq~TgN~LDlAI~G~GFFQv~~pDG~~~YTR~G~F~~n~~G~lVt~~aq~Gy~l~P---------------------  139 (263)
T TIGR02488        81 QGSLQNTGNDLDLAIEGEGFFQVLLPDGTTAYTRDGAFKLNAEGQLVTSSAQDGYPLQP---------------------  139 (263)
T ss_pred             CCCEECCCCCCCEEEECCCEEEEECCCCCEEECCCCCCCCCCCCCEECCCCCCCCEECC---------------------
T ss_conf             67201058760047864833898669987610124674608995276443468965366---------------------


Q ss_pred             CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEEC
Q ss_conf             44445545433321123310245544444444445677654322210367540688736778762135555420477630
Q gi|254780525|r  148 NVKHAELSAMPTTTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQ  227 (421)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  227 (421)
T Consensus       140 ------------------------------~-------------------------------------------------  140 (263)
T TIGR02488       140 ------------------------------E-------------------------------------------------  140 (263)
T ss_pred             ------------------------------E-------------------------------------------------
T ss_conf             ------------------------------2-------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             44444656666443210012202445644577653321246776655433233333100233334323344433234434
Q gi|254780525|r  228 DQSTNNSFPYNVAPLNTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEINGHAPGKPK  307 (421)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (421)
T Consensus       141 ------------------------------------------------------------------------ItiP~~A~  148 (263)
T TIGR02488       141 ------------------------------------------------------------------------ITIPENAT  148 (263)
T ss_pred             ------------------------------------------------------------------------EECCCCCC
T ss_conf             ------------------------------------------------------------------------47188870


Q ss_pred             C-CCCCCCCEEEEEECCCCC-CCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCH
Q ss_conf             4-554776338998414321-10122200121786787741695266323358702137888761146523100047789
Q gi|254780525|r  308 D-FSVSKDGYVDIIYDDGTR-VPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDI  385 (421)
Q Consensus       308 ~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnl  385 (421)
T Consensus       149 ~ni~v~~dG~VsV~~~~~~~~~~~GQi~la~FiNPAGL~a~G~NLf~eT~ASG~p~~g~Pg~~G~G~l~QG~LE~SNV~v  228 (263)
T TIGR02488       149 SNITVGSDGEVSVRQGGQTEPQEVGQITLATFINPAGLEAVGENLFRETPASGDPIVGTPGLDGFGKLKQGFLEASNVNV  228 (263)
T ss_pred             EEEEECCCCEEEEEECCCCCCEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEECCCCH
T ss_conf             10698678789998378972000101011210154347734564101578868876888888873388816163026744


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999999999999999999999999997512
Q gi|254780525|r  386 ASELTELIEAQRNYAVNSKVFQTGSDFMDILISLK  420 (421)
Q Consensus       386 DEEm~nLi~~Q~aYqAsArvItt~demldtLlnl~  420 (421)
T Consensus       229 V~EmvdmI~aQRAYE~NSK~i~asD~Mlq~~~~~~  263 (263)
T TIGR02488       229 VQEMVDMITAQRAYEMNSKVIQASDQMLQTVSQLL  263 (263)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             56664233688898775388887999999996129