HHsearch alignment for GI: 254780525 and conserved domain: TIGR02488
>TIGR02488 flgG_G_neg flagellar basal-body rod protein FlgG; InterPro: IPR012834 This family consists of the FlgG protein of the flagellar apparatus in the proteobacteria and spirochetes. The basal body constitutes a major portion of the flagellar organelle and consists of four rings (L,P,S, and M) mounted on a central rod . The rod consists of about 26 subunits of flgG in the distal portion, and flgB, flgC and flgF are thought to build up the proximal portion of the rod with about 6 subunits each.; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0009426 flagellin-based flagellum basal body distal rod.
Probab=100.00 E-value=0 Score=315.27 Aligned_cols=243 Identities=32% Similarity=0.509 Sum_probs=213.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCC---------------CCCCCCCEEEEEEEEEEC
Q ss_conf 89999999999998637887753027786714220024654304777---------------763122058857886303
Q gi|254780525|r 6 SMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTS---------------NSYVSGGLEISTKDMISE 70 (421)
Q Consensus 6 ~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~---------------~~~~G~GV~v~~i~r~~~ 70 (421)
T Consensus 1 aL~tAaTGM~AQQtn~~VIsNNLANVnT~GFKk~RA~FEDL~YQ~~r~pG~q~~~~~t~~P~G~~~G~GVr~~at~k~~~ 80 (263)
T TIGR02488 1 ALWTAATGMNAQQTNMDVISNNLANVNTTGFKKDRAEFEDLLYQTVRQPGAQSSEQQTILPVGVQVGLGVRVVATQKLFT 80 (263)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCEEECCCEEEEEEEEEEE
T ss_conf 93033655888735788877633110234412123676557477312588887776300346624358504235766641
Q ss_pred CCCEEECCCHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC---CCCCHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 4111214830221103666201017988256420112221236720145---5620111110134555432344544444
Q gi|254780525|r 71 QGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENV---AGGVLLGYPLKNASAPLIVNSFQGLERI 147 (421)
Q Consensus 71 ~~~~~~t~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (421)
T Consensus 81 QG~lq~TgN~LDlAI~G~GFFQv~~pDG~~~YTR~G~F~~n~~G~lVt~~aq~Gy~l~P--------------------- 139 (263)
T TIGR02488 81 QGSLQNTGNDLDLAIEGEGFFQVLLPDGTTAYTRDGAFKLNAEGQLVTSSAQDGYPLQP--------------------- 139 (263)
T ss_pred CCCEECCCCCCCEEEECCCEEEEECCCCCEEECCCCCCCCCCCCCEECCCCCCCCEECC---------------------
T ss_conf 67201058760047864833898669987610124674608995276443468965366---------------------
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEEC
Q ss_conf 44445545433321123310245544444444445677654322210367540688736778762135555420477630
Q gi|254780525|r 148 NVKHAELSAMPTTTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQ 227 (421)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 227 (421)
T Consensus 140 ------------------------------~------------------------------------------------- 140 (263)
T TIGR02488 140 ------------------------------E------------------------------------------------- 140 (263)
T ss_pred ------------------------------E-------------------------------------------------
T ss_conf ------------------------------2-------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44444656666443210012202445644577653321246776655433233333100233334323344433234434
Q gi|254780525|r 228 DQSTNNSFPYNVAPLNTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEINGHAPGKPK 307 (421)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
T Consensus 141 ------------------------------------------------------------------------ItiP~~A~ 148 (263)
T TIGR02488 141 ------------------------------------------------------------------------ITIPENAT 148 (263)
T ss_pred ------------------------------------------------------------------------EECCCCCC
T ss_conf ------------------------------------------------------------------------47188870
Q ss_pred C-CCCCCCCEEEEEECCCCC-CCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCH
Q ss_conf 4-554776338998414321-10122200121786787741695266323358702137888761146523100047789
Q gi|254780525|r 308 D-FSVSKDGYVDIIYDDGTR-VPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDI 385 (421)
Q Consensus 308 ~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnl 385 (421)
T Consensus 149 ~ni~v~~dG~VsV~~~~~~~~~~~GQi~la~FiNPAGL~a~G~NLf~eT~ASG~p~~g~Pg~~G~G~l~QG~LE~SNV~v 228 (263)
T TIGR02488 149 SNITVGSDGEVSVRQGGQTEPQEVGQITLATFINPAGLEAVGENLFRETPASGDPIVGTPGLDGFGKLKQGFLEASNVNV 228 (263)
T ss_pred EEEEECCCCEEEEEECCCCCCEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEECCCCH
T ss_conf 10698678789998378972000101011210154347734564101578868876888888873388816163026744
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999999999999999997512
Q gi|254780525|r 386 ASELTELIEAQRNYAVNSKVFQTGSDFMDILISLK 420 (421)
Q Consensus 386 DEEm~nLi~~Q~aYqAsArvItt~demldtLlnl~ 420 (421)
T Consensus 229 V~EmvdmI~aQRAYE~NSK~i~asD~Mlq~~~~~~ 263 (263)
T TIGR02488 229 VQEMVDMITAQRAYEMNSKVIQASDQMLQTVSQLL 263 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 56664233688898775388887999999996129